miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 171558 0.67 0.662763
Target:  5'- uGUCCccgCCCCCUGUCAuuCUAcCCUCcaACGGc -3'
miRNA:   3'- -UAGGa--GGGGGGCGGU--GAU-GGAG--UGCC- -5'
33313 5' -60.8 NC_007605.1 + 171352 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 171020 0.67 0.662763
Target:  5'- uGUCCccgCCCCCUGUCAuuCUAcCCUCcaACGGc -3'
miRNA:   3'- -UAGGa--GGGGGGCGGU--GAU-GGAG--UGCC- -5'
33313 5' -60.8 NC_007605.1 + 170815 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 170498 0.67 0.662763
Target:  5'- uGUCCccgCCCCCUGUCAuuCUAcCCUCcaACGGc -3'
miRNA:   3'- -UAGGa--GGGGGGCGGU--GAU-GGAG--UGCC- -5'
33313 5' -60.8 NC_007605.1 + 170292 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 169960 0.67 0.662763
Target:  5'- uGUCCccgCCCCCUGUCAuuCUAcCCUCcaACGGc -3'
miRNA:   3'- -UAGGa--GGGGGGCGGU--GAU-GGAG--UGCC- -5'
33313 5' -60.8 NC_007605.1 + 169755 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 169430 0.69 0.574696
Target:  5'- -gCCUCCCgCCUGCCGCcaacgACCUCccaACGu -3'
miRNA:   3'- uaGGAGGG-GGGCGGUGa----UGGAG---UGCc -5'
33313 5' -60.8 NC_007605.1 + 166224 0.69 0.574696
Target:  5'- -cCCUCCCCCU-CC-CUACuCUcCACGGg -3'
miRNA:   3'- uaGGAGGGGGGcGGuGAUG-GA-GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 163796 0.66 0.73961
Target:  5'- -aCCUCCCugguCUCGCCACagaggGCCUCGagaccCGGc -3'
miRNA:   3'- uaGGAGGG----GGGCGGUGa----UGGAGU-----GCC- -5'
33313 5' -60.8 NC_007605.1 + 161182 0.67 0.67253
Target:  5'- cGUCCUagaaaCCCUggCGaCCAUUGCCUCcaGCGGg -3'
miRNA:   3'- -UAGGAg----GGGG--GC-GGUGAUGGAG--UGCC- -5'
33313 5' -60.8 NC_007605.1 + 159862 0.69 0.536252
Target:  5'- -cCCUCCCCCUGCCcCguugcACCgauagCAUGGc -3'
miRNA:   3'- uaGGAGGGGGGCGGuGa----UGGa----GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 159767 0.68 0.613735
Target:  5'- -gCCUUgCCCCCGCCAgCgccuCCUCGCaGGc -3'
miRNA:   3'- uaGGAG-GGGGGCGGU-Gau--GGAGUG-CC- -5'
33313 5' -60.8 NC_007605.1 + 158796 0.67 0.691965
Target:  5'- -cCCgcaCCCCCCGCCACcacggugcagccUACCgcCACGc -3'
miRNA:   3'- uaGGa--GGGGGGCGGUG------------AUGGa-GUGCc -5'
33313 5' -60.8 NC_007605.1 + 153438 0.66 0.758122
Target:  5'- --gCUCCCCCaugggGaCC-CUGCCuUCACGGa -3'
miRNA:   3'- uagGAGGGGGg----C-GGuGAUGG-AGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 151339 0.67 0.652974
Target:  5'- cUCCUaugcgCCCCCCGUgACggaGCUggggCACGGg -3'
miRNA:   3'- uAGGA-----GGGGGGCGgUGa--UGGa---GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 143852 0.69 0.574696
Target:  5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3'
miRNA:   3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 143384 0.66 0.748913
Target:  5'- -gCCUCCCCCC-CCAUgaaGCggguggCGCGGg -3'
miRNA:   3'- uaGGAGGGGGGcGGUGa--UGga----GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 143181 0.67 0.691965
Target:  5'- ----aCCCCgCGCCACccGCUUCAUGGg -3'
miRNA:   3'- uaggaGGGGgGCGGUGa-UGGAGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.