Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33313 | 5' | -60.8 | NC_007605.1 | + | 47646 | 0.67 | 0.662763 |
Target: 5'- cAUgCUCCCCCCaCCACcgUCUCcCGGg -3' miRNA: 3'- -UAgGAGGGGGGcGGUGauGGAGuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 46352 | 0.67 | 0.690997 |
Target: 5'- aAUCUcgCCCCCCuaauugcGCCAuCUGCCUaCGCGa -3' miRNA: 3'- -UAGGa-GGGGGG-------CGGU-GAUGGA-GUGCc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 45298 | 0.67 | 0.691965 |
Target: 5'- gGUCCgUCCCCUGCCACgUACCUaauaguagucCACa- -3' miRNA: 3'- -UAGGaGGGGGGCGGUG-AUGGA----------GUGcc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 44407 | 0.69 | 0.565015 |
Target: 5'- cUCuCUCCCCCgGgCGCUGCCUuCGCc- -3' miRNA: 3'- uAG-GAGGGGGgCgGUGAUGGA-GUGcc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 41036 | 0.69 | 0.574696 |
Target: 5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3' miRNA: 3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 40569 | 0.66 | 0.748913 |
Target: 5'- -gCCUCCCCCC-CCAUgaaGCggguggCGCGGg -3' miRNA: 3'- uaGGAGGGGGGcGGUGa--UGga----GUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 40366 | 0.67 | 0.691965 |
Target: 5'- ----aCCCCgCGCCACccGCUUCAUGGg -3' miRNA: 3'- uaggaGGGGgGCGGUGa-UGGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 39845 | 0.66 | 0.752608 |
Target: 5'- -cCCUCCCCCagggcguacccggcuUGCCugguucugggGCU-CCUCugGGg -3' miRNA: 3'- uaGGAGGGGG---------------GCGG----------UGAuGGAGugCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 37391 | 0.68 | 0.647092 |
Target: 5'- -cCCUCCCCCUGCUcuguccccgGCUcugGCCUUgagucuuagaggguuGCGGg -3' miRNA: 3'- uaGGAGGGGGGCGG---------UGA---UGGAG---------------UGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 34597 | 0.74 | 0.298463 |
Target: 5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3' miRNA: 3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 32247 | 0.67 | 0.682266 |
Target: 5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3' miRNA: 3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 31528 | 0.74 | 0.298463 |
Target: 5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3' miRNA: 3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 29178 | 0.67 | 0.682266 |
Target: 5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3' miRNA: 3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 28459 | 0.74 | 0.298463 |
Target: 5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3' miRNA: 3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 26109 | 0.67 | 0.682266 |
Target: 5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3' miRNA: 3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 25390 | 0.74 | 0.298463 |
Target: 5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3' miRNA: 3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 23040 | 0.67 | 0.682266 |
Target: 5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3' miRNA: 3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 22321 | 0.74 | 0.298463 |
Target: 5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3' miRNA: 3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 19971 | 0.67 | 0.682266 |
Target: 5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3' miRNA: 3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 19252 | 0.74 | 0.298463 |
Target: 5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3' miRNA: 3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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