miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 52437 0.69 0.574696
Target:  5'- cGUCUUCCCCgUCGUUGCUGCC--GCGGg -3'
miRNA:   3'- -UAGGAGGGG-GGCGGUGAUGGagUGCC- -5'
33313 5' -60.8 NC_007605.1 + 143852 0.69 0.574696
Target:  5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3'
miRNA:   3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 87874 0.74 0.318881
Target:  5'- uUCCgcugggCCUCCUGCCGCgggGCCUCACa- -3'
miRNA:   3'- uAGGa-----GGGGGGCGGUGa--UGGAGUGcc -5'
33313 5' -60.8 NC_007605.1 + 34597 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 31528 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 28459 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 25390 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 22321 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 19252 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 16183 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 102525 0.74 0.325917
Target:  5'- cUCUUCCCCCCgGCCAUcuuUGCCggaACGGu -3'
miRNA:   3'- uAGGAGGGGGG-CGGUG---AUGGag-UGCC- -5'
33313 5' -60.8 NC_007605.1 + 87825 0.71 0.453594
Target:  5'- cUCCUgccgcggggCCUCCUGCCGCgggGCCUCGCa- -3'
miRNA:   3'- uAGGA---------GGGGGGCGGUGa--UGGAGUGcc -5'
33313 5' -60.8 NC_007605.1 + 41036 0.69 0.574696
Target:  5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3'
miRNA:   3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 159862 0.69 0.536252
Target:  5'- -cCCUCCCCCUGCCcCguugcACCgauagCAUGGc -3'
miRNA:   3'- uaGGAGGGGGGCGGuGa----UGGa----GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 133738 0.7 0.526776
Target:  5'- -aCCagcagCgCCCCCuCC-CUGCCUCACGGg -3'
miRNA:   3'- uaGGa----G-GGGGGcGGuGAUGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 5586 0.7 0.498744
Target:  5'- --aUUCCCCCCGCCuuuggGC-ACCcCACGGg -3'
miRNA:   3'- uagGAGGGGGGCGG-----UGaUGGaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 87751 0.7 0.489547
Target:  5'- cUCCUgccguggggCCUCCUGCCGCgggGCCUCcugccGCGGg -3'
miRNA:   3'- uAGGA---------GGGGGGCGGUGa--UGGAG-----UGCC- -5'
33313 5' -60.8 NC_007605.1 + 105466 0.7 0.488632
Target:  5'- cGUCCUCCCCCCcucccucGCCGCcuuCC-CGCGu -3'
miRNA:   3'- -UAGGAGGGGGG-------CGGUGau-GGaGUGCc -5'
33313 5' -60.8 NC_007605.1 + 138588 0.7 0.48589
Target:  5'- -aCCUCCCCCgGCCuggugcaaaauguCUGCCUCAg-- -3'
miRNA:   3'- uaGGAGGGGGgCGGu------------GAUGGAGUgcc -5'
33313 5' -60.8 NC_007605.1 + 116577 0.7 0.48043
Target:  5'- -cCCUCCCCCCGCgGgaGgCUCAauCGGc -3'
miRNA:   3'- uaGGAGGGGGGCGgUgaUgGAGU--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.