Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33313 | 5' | -60.8 | NC_007605.1 | + | 166224 | 0.69 | 0.574696 |
Target: 5'- -cCCUCCCCCU-CC-CUACuCUcCACGGg -3' miRNA: 3'- uaGGAGGGGGGcGGuGAUG-GA-GUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 52437 | 0.69 | 0.574696 |
Target: 5'- cGUCUUCCCCgUCGUUGCUGCC--GCGGg -3' miRNA: 3'- -UAGGAGGGG-GGCGGUGAUGGagUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 143852 | 0.69 | 0.574696 |
Target: 5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3' miRNA: 3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 41036 | 0.69 | 0.574696 |
Target: 5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3' miRNA: 3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 159862 | 0.69 | 0.536252 |
Target: 5'- -cCCUCCCCCUGCCcCguugcACCgauagCAUGGc -3' miRNA: 3'- uaGGAGGGGGGCGGuGa----UGGa----GUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 133738 | 0.7 | 0.526776 |
Target: 5'- -aCCagcagCgCCCCCuCC-CUGCCUCACGGg -3' miRNA: 3'- uaGGa----G-GGGGGcGGuGAUGGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 5586 | 0.7 | 0.498744 |
Target: 5'- --aUUCCCCCCGCCuuuggGC-ACCcCACGGg -3' miRNA: 3'- uagGAGGGGGGCGG-----UGaUGGaGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 87751 | 0.7 | 0.489547 |
Target: 5'- cUCCUgccguggggCCUCCUGCCGCgggGCCUCcugccGCGGg -3' miRNA: 3'- uAGGA---------GGGGGGCGGUGa--UGGAG-----UGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 105466 | 0.7 | 0.488632 |
Target: 5'- cGUCCUCCCCCCcucccucGCCGCcuuCC-CGCGu -3' miRNA: 3'- -UAGGAGGGGGG-------CGGUGau-GGaGUGCc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 96809 | 0.69 | 0.535302 |
Target: 5'- cGUCCUCUaCCCCGgcggccuCCACUACCUCcuCGa -3' miRNA: 3'- -UAGGAGG-GGGGC-------GGUGAUGGAGu-GCc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 44407 | 0.69 | 0.565015 |
Target: 5'- cUCuCUCCCCCgGgCGCUGCCUuCGCc- -3' miRNA: 3'- uAG-GAGGGGGgCgGUGAUGGA-GUGcc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 169430 | 0.69 | 0.574696 |
Target: 5'- -gCCUCCCgCCUGCCGCcaacgACCUCccaACGu -3' miRNA: 3'- uaGGAGGG-GGGCGGUGa----UGGAG---UGCc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 63294 | 0.69 | 0.584414 |
Target: 5'- --gCUCCCCCCuCCACUGCCaccCcCGGc -3' miRNA: 3'- uagGAGGGGGGcGGUGAUGGa--GuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 137316 | 0.7 | 0.507086 |
Target: 5'- uGUCCUCCCgggguccagaguuCCCgGCUGCUcccGCCUCAgGGa -3' miRNA: 3'- -UAGGAGGG-------------GGG-CGGUGA---UGGAGUgCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 59844 | 0.7 | 0.498744 |
Target: 5'- uUCCgcaUCCuCCCCGCCAaaaaaCUCGCGGc -3' miRNA: 3'- uAGG---AGG-GGGGCGGUgaug-GAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 62800 | 0.7 | 0.489547 |
Target: 5'- gGUCCUCCgCCaccaCGCCuACUACCUacucCGGg -3' miRNA: 3'- -UAGGAGG-GGg---GCGG-UGAUGGAgu--GCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 50880 | 0.71 | 0.427593 |
Target: 5'- gAUUCggCCCUCCGCCACccGCCUCcccACGGc -3' miRNA: 3'- -UAGGa-GGGGGGCGGUGa-UGGAG---UGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 103726 | 0.72 | 0.394339 |
Target: 5'- -aUCUCCCCCgGUCGCg--CUCGCGGg -3' miRNA: 3'- uaGGAGGGGGgCGGUGaugGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 3460 | 0.74 | 0.298463 |
Target: 5'- gAUCUUCUCCCC-UCGCUGCCUCACu- -3' miRNA: 3'- -UAGGAGGGGGGcGGUGAUGGAGUGcc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 40569 | 0.66 | 0.748913 |
Target: 5'- -gCCUCCCCCC-CCAUgaaGCggguggCGCGGg -3' miRNA: 3'- uaGGAGGGGGGcGGUGa--UGga----GUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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