miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 74444 0.66 0.711217
Target:  5'- -gCCUUCCCCUuCCuGCgcgGCCUCACGc -3'
miRNA:   3'- uaGGAGGGGGGcGG-UGa--UGGAGUGCc -5'
33313 5' -60.8 NC_007605.1 + 73789 0.66 0.73961
Target:  5'- cGUgCUCCCCUCGCUcCUggacagggGCUUUGCGGa -3'
miRNA:   3'- -UAgGAGGGGGGCGGuGA--------UGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 57633 0.66 0.73961
Target:  5'- uUCCUCagcagcagCCCCCGCCAUcaGCCgCcCGGg -3'
miRNA:   3'- uAGGAG--------GGGGGCGGUGa-UGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 171352 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 47646 0.67 0.662763
Target:  5'- cAUgCUCCCCCCaCCACcgUCUCcCGGg -3'
miRNA:   3'- -UAgGAGGGGGGcGGUGauGGAGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 151339 0.67 0.652974
Target:  5'- cUCCUaugcgCCCCCCGUgACggaGCUggggCACGGg -3'
miRNA:   3'- uAGGA-----GGGGGGCGgUGa--UGGa---GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 3460 0.74 0.298463
Target:  5'- gAUCUUCUCCCC-UCGCUGCCUCACu- -3'
miRNA:   3'- -UAGGAGGGGGGcGGUGAUGGAGUGcc -5'
33313 5' -60.8 NC_007605.1 + 103726 0.72 0.394339
Target:  5'- -aUCUCCCCCgGUCGCg--CUCGCGGg -3'
miRNA:   3'- uaGGAGGGGGgCGGUGaugGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 50880 0.71 0.427593
Target:  5'- gAUUCggCCCUCCGCCACccGCCUCcccACGGc -3'
miRNA:   3'- -UAGGa-GGGGGGCGGUGa-UGGAG---UGCC- -5'
33313 5' -60.8 NC_007605.1 + 62800 0.7 0.489547
Target:  5'- gGUCCUCCgCCaccaCGCCuACUACCUacucCGGg -3'
miRNA:   3'- -UAGGAGG-GGg---GCGG-UGAUGGAgu--GCC- -5'
33313 5' -60.8 NC_007605.1 + 59844 0.7 0.498744
Target:  5'- uUCCgcaUCCuCCCCGCCAaaaaaCUCGCGGc -3'
miRNA:   3'- uAGG---AGG-GGGGCGGUgaug-GAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 137316 0.7 0.507086
Target:  5'- uGUCCUCCCgggguccagaguuCCCgGCUGCUcccGCCUCAgGGa -3'
miRNA:   3'- -UAGGAGGG-------------GGG-CGGUGA---UGGAGUgCC- -5'
33313 5' -60.8 NC_007605.1 + 96809 0.69 0.535302
Target:  5'- cGUCCUCUaCCCCGgcggccuCCACUACCUCcuCGa -3'
miRNA:   3'- -UAGGAGG-GGGGC-------GGUGAUGGAGu-GCc -5'
33313 5' -60.8 NC_007605.1 + 44407 0.69 0.565015
Target:  5'- cUCuCUCCCCCgGgCGCUGCCUuCGCc- -3'
miRNA:   3'- uAG-GAGGGGGgCgGUGAUGGA-GUGcc -5'
33313 5' -60.8 NC_007605.1 + 169430 0.69 0.574696
Target:  5'- -gCCUCCCgCCUGCCGCcaacgACCUCccaACGu -3'
miRNA:   3'- uaGGAGGG-GGGCGGUGa----UGGAG---UGCc -5'
33313 5' -60.8 NC_007605.1 + 63294 0.69 0.584414
Target:  5'- --gCUCCCCCCuCCACUGCCaccCcCGGc -3'
miRNA:   3'- uagGAGGGGGGcGGUGAUGGa--GuGCC- -5'
33313 5' -60.8 NC_007605.1 + 136968 0.68 0.593188
Target:  5'- cGUCCUcccccgggaauagCCCCCCGCCuuCUucauCCUCcuCGGg -3'
miRNA:   3'- -UAGGA-------------GGGGGGCGGu-GAu---GGAGu-GCC- -5'
33313 5' -60.8 NC_007605.1 + 96757 0.68 0.594164
Target:  5'- cUCCUCgaCCCCGgccuCCACUGCCUCcuCGa -3'
miRNA:   3'- uAGGAGg-GGGGC----GGUGAUGGAGu-GCc -5'
33313 5' -60.8 NC_007605.1 + 101000 0.68 0.643169
Target:  5'- uUCCUCUCCCaCGCCGaggucaagacCUuCCUCACa- -3'
miRNA:   3'- uAGGAGGGGG-GCGGU----------GAuGGAGUGcc -5'
33313 5' -60.8 NC_007605.1 + 37391 0.68 0.647092
Target:  5'- -cCCUCCCCCUGCUcuguccccgGCUcugGCCUUgagucuuagaggguuGCGGg -3'
miRNA:   3'- uaGGAGGGGGGCGG---------UGA---UGGAG---------------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.