miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 63294 0.69 0.584414
Target:  5'- --gCUCCCCCCuCCACUGCCaccCcCGGc -3'
miRNA:   3'- uagGAGGGGGGcGGUGAUGGa--GuGCC- -5'
33313 5' -60.8 NC_007605.1 + 50880 0.71 0.427593
Target:  5'- gAUUCggCCCUCCGCCACccGCCUCcccACGGc -3'
miRNA:   3'- -UAGGa-GGGGGGCGGUGa-UGGAG---UGCC- -5'
33313 5' -60.8 NC_007605.1 + 169755 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 59376 0.66 0.709302
Target:  5'- cGUCCUCCCCgCC-CCACcGCCgaagaugaguaACGGc -3'
miRNA:   3'- -UAGGAGGGG-GGcGGUGaUGGag---------UGCC- -5'
33313 5' -60.8 NC_007605.1 + 171558 0.67 0.662763
Target:  5'- uGUCCccgCCCCCUGUCAuuCUAcCCUCcaACGGc -3'
miRNA:   3'- -UAGGa--GGGGGGCGGU--GAU-GGAG--UGCC- -5'
33313 5' -60.8 NC_007605.1 + 103726 0.72 0.394339
Target:  5'- -aUCUCCCCCgGUCGCg--CUCGCGGg -3'
miRNA:   3'- uaGGAGGGGGgCGGUGaugGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 158796 0.67 0.691965
Target:  5'- -cCCgcaCCCCCCGCCACcacggugcagccUACCgcCACGc -3'
miRNA:   3'- uaGGa--GGGGGGCGGUG------------AUGGa-GUGCc -5'
33313 5' -60.8 NC_007605.1 + 3460 0.74 0.298463
Target:  5'- gAUCUUCUCCCC-UCGCUGCCUCACu- -3'
miRNA:   3'- -UAGGAGGGGGGcGGUGAUGGAGUGcc -5'
33313 5' -60.8 NC_007605.1 + 60568 0.97 0.008887
Target:  5'- cAUCCUCCCCCCGCCACUACUcCACGGa -3'
miRNA:   3'- -UAGGAGGGGGGCGGUGAUGGaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 171020 0.67 0.662763
Target:  5'- uGUCCccgCCCCCUGUCAuuCUAcCCUCcaACGGc -3'
miRNA:   3'- -UAGGa--GGGGGGCGGU--GAU-GGAG--UGCC- -5'
33313 5' -60.8 NC_007605.1 + 143384 0.66 0.748913
Target:  5'- -gCCUCCCCCC-CCAUgaaGCggguggCGCGGg -3'
miRNA:   3'- uaGGAGGGGGGcGGUGa--UGga----GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 136968 0.68 0.593188
Target:  5'- cGUCCUcccccgggaauagCCCCCCGCCuuCUucauCCUCcuCGGg -3'
miRNA:   3'- -UAGGA-------------GGGGGGCGGu-GAu---GGAGu-GCC- -5'
33313 5' -60.8 NC_007605.1 + 58383 0.67 0.67253
Target:  5'- aGUCCUgcaaagaccaaCUCCCCGCCGuCgucuccgGCCUCuGCGGc -3'
miRNA:   3'- -UAGGA-----------GGGGGGCGGU-Ga------UGGAG-UGCC- -5'
33313 5' -60.8 NC_007605.1 + 74444 0.66 0.711217
Target:  5'- -gCCUUCCCCUuCCuGCgcgGCCUCACGc -3'
miRNA:   3'- uaGGAGGGGGGcGG-UGa--UGGAGUGCc -5'
33313 5' -60.8 NC_007605.1 + 171352 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 96809 0.69 0.535302
Target:  5'- cGUCCUCUaCCCCGgcggccuCCACUACCUCcuCGa -3'
miRNA:   3'- -UAGGAGG-GGGGC-------GGUGAUGGAGu-GCc -5'
33313 5' -60.8 NC_007605.1 + 62800 0.7 0.489547
Target:  5'- gGUCCUCCgCCaccaCGCCuACUACCUacucCGGg -3'
miRNA:   3'- -UAGGAGG-GGg---GCGG-UGAUGGAgu--GCC- -5'
33313 5' -60.8 NC_007605.1 + 87751 0.7 0.489547
Target:  5'- cUCCUgccguggggCCUCCUGCCGCgggGCCUCcugccGCGGg -3'
miRNA:   3'- uAGGA---------GGGGGGCGGUGa--UGGAG-----UGCC- -5'
33313 5' -60.8 NC_007605.1 + 131650 0.67 0.67253
Target:  5'- cUCCUUCCUCUgaGCCuugGCCUgGCGGg -3'
miRNA:   3'- uAGGAGGGGGG--CGGugaUGGAgUGCC- -5'
33313 5' -60.8 NC_007605.1 + 105330 0.67 0.662763
Target:  5'- -gCCUgCCCUCCGCCAUcaggcguuCC-CACGGg -3'
miRNA:   3'- uaGGA-GGGGGGCGGUGau------GGaGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.