miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 115235 0.68 0.594164
Target:  5'- -cCUUCCCCaCCGgCGCUGCC-C-CGGa -3'
miRNA:   3'- uaGGAGGGG-GGCgGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 13834 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 28459 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 19252 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 87825 0.71 0.453594
Target:  5'- cUCCUgccgcggggCCUCCUGCCGCgggGCCUCGCa- -3'
miRNA:   3'- uAGGA---------GGGGGGCGGUGa--UGGAGUGcc -5'
33313 5' -60.8 NC_007605.1 + 163796 0.66 0.73961
Target:  5'- -aCCUCCCugguCUCGCCACagaggGCCUCGagaccCGGc -3'
miRNA:   3'- uaGGAGGG----GGGCGGUGa----UGGAGU-----GCC- -5'
33313 5' -60.8 NC_007605.1 + 134575 0.66 0.73961
Target:  5'- -cCCUggggcgCCCCUCGCCcauGCUugCggCGCGGg -3'
miRNA:   3'- uaGGA------GGGGGGCGG---UGAugGa-GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 116692 0.68 0.60394
Target:  5'- -aCCUCCCaCCGCCACguagaCGCGGg -3'
miRNA:   3'- uaGGAGGGgGGCGGUGauggaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 132279 0.68 0.613735
Target:  5'- -aCCUgCCCCUgaGUCACUACCggUugGGg -3'
miRNA:   3'- uaGGAgGGGGG--CGGUGAUGGa-GugCC- -5'
33313 5' -60.8 NC_007605.1 + 159767 0.68 0.613735
Target:  5'- -gCCUUgCCCCCGCCAgCgccuCCUCGCaGGc -3'
miRNA:   3'- uaGGAG-GGGGGCGGU-Gau--GGAGUG-CC- -5'
33313 5' -60.8 NC_007605.1 + 105330 0.67 0.662763
Target:  5'- -gCCUgCCCUCCGCCAUcaggcguuCC-CACGGg -3'
miRNA:   3'- uaGGA-GGGGGGCGGUGau------GGaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 131650 0.67 0.67253
Target:  5'- cUCCUUCCUCUgaGCCuugGCCUgGCGGg -3'
miRNA:   3'- uAGGAGGGGGG--CGGugaUGGAgUGCC- -5'
33313 5' -60.8 NC_007605.1 + 76228 0.69 0.584414
Target:  5'- cUCUUCCUCgCCGCCACcugGCUUCugacCGGg -3'
miRNA:   3'- uAGGAGGGG-GGCGGUGa--UGGAGu---GCC- -5'
33313 5' -60.8 NC_007605.1 + 166224 0.69 0.574696
Target:  5'- -cCCUCCCCCU-CC-CUACuCUcCACGGg -3'
miRNA:   3'- uaGGAGGGGGGcGGuGAUG-GA-GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 56447 0.68 0.594164
Target:  5'- cUCCUUCCCCCGCCucCUgAUCUC-CGc -3'
miRNA:   3'- uAGGAGGGGGGCGGu-GA-UGGAGuGCc -5'
33313 5' -60.8 NC_007605.1 + 87751 0.7 0.489547
Target:  5'- cUCCUgccguggggCCUCCUGCCGCgggGCCUCcugccGCGGg -3'
miRNA:   3'- uAGGA---------GGGGGGCGGUGa--UGGAG-----UGCC- -5'
33313 5' -60.8 NC_007605.1 + 105466 0.7 0.488632
Target:  5'- cGUCCUCCCCCCcucccucGCCGCcuuCC-CGCGu -3'
miRNA:   3'- -UAGGAGGGGGG-------CGGUGau-GGaGUGCc -5'
33313 5' -60.8 NC_007605.1 + 138588 0.7 0.48589
Target:  5'- -aCCUCCCCCgGCCuggugcaaaauguCUGCCUCAg-- -3'
miRNA:   3'- uaGGAGGGGGgCGGu------------GAUGGAGUgcc -5'
33313 5' -60.8 NC_007605.1 + 116577 0.7 0.48043
Target:  5'- -cCCUCCCCCCGCgGgaGgCUCAauCGGc -3'
miRNA:   3'- uaGGAGGGGGGCGgUgaUgGAGU--GCC- -5'
33313 5' -60.8 NC_007605.1 + 87794 0.66 0.720754
Target:  5'- ----gCCUCCUGCCGCgggGCCUCcugccGCGGg -3'
miRNA:   3'- uaggaGGGGGGCGGUGa--UGGAG-----UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.