miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33314 3' -58 NC_007605.1 + 170392 0.66 0.85691
Target:  5'- aCGGUCacgcauGGCUGCGCCCgCgCGGCg-- -3'
miRNA:   3'- -GCCAGc-----CUGACGCGGGgGaGUUGaau -5'
33314 3' -58 NC_007605.1 + 170914 0.66 0.85691
Target:  5'- aCGGUCacgcauGGCUGCGCCCgCgCGGCg-- -3'
miRNA:   3'- -GCCAGc-----CUGACGCGGGgGaGUUGaau -5'
33314 3' -58 NC_007605.1 + 171452 0.66 0.85691
Target:  5'- aCGGUCacgcauGGCUGCGCCCgCgCGGCg-- -3'
miRNA:   3'- -GCCAGc-----CUGACGCGGGgGaGUUGaau -5'
33314 3' -58 NC_007605.1 + 169644 0.66 0.833224
Target:  5'- gGGUCGGGggGCGCCgCCgggcgCAGCc-- -3'
miRNA:   3'- gCCAGCCUgaCGCGGgGGa----GUUGaau -5'
33314 3' -58 NC_007605.1 + 50847 0.66 0.824966
Target:  5'- -cGUCGGGCUGCGaCCCCgu-GCg-- -3'
miRNA:   3'- gcCAGCCUGACGCgGGGGaguUGaau -5'
33314 3' -58 NC_007605.1 + 13946 0.67 0.816538
Target:  5'- gGGUCGGGCUGgGCCgCCa------- -3'
miRNA:   3'- gCCAGCCUGACgCGGgGGaguugaau -5'
33314 3' -58 NC_007605.1 + 17015 0.67 0.816538
Target:  5'- gGGUCGGGCUGgGCCgCCa------- -3'
miRNA:   3'- gCCAGCCUGACgCGGgGGaguugaau -5'
33314 3' -58 NC_007605.1 + 20084 0.67 0.816538
Target:  5'- gGGUCGGGCUGgGCCgCCa------- -3'
miRNA:   3'- gCCAGCCUGACgCGGgGGaguugaau -5'
33314 3' -58 NC_007605.1 + 23152 0.67 0.816538
Target:  5'- gGGUCGGGCUGgGCCgCCa------- -3'
miRNA:   3'- gCCAGCCUGACgCGGgGGaguugaau -5'
33314 3' -58 NC_007605.1 + 26221 0.67 0.816538
Target:  5'- gGGUCGGGCUGgGCCgCCa------- -3'
miRNA:   3'- gCCAGCCUGACgCGGgGGaguugaau -5'
33314 3' -58 NC_007605.1 + 29290 0.67 0.816538
Target:  5'- gGGUCGGGCUGgGCCgCCa------- -3'
miRNA:   3'- gCCAGCCUGACgCGGgGGaguugaau -5'
33314 3' -58 NC_007605.1 + 32359 0.67 0.816538
Target:  5'- gGGUCGGGCUGgGCCgCCa------- -3'
miRNA:   3'- gCCAGCCUGACgCGGgGGaguugaau -5'
33314 3' -58 NC_007605.1 + 35428 0.67 0.816538
Target:  5'- gGGUCGGGCUGgGCCgCCa------- -3'
miRNA:   3'- gCCAGCCUGACgCGGgGGaguugaau -5'
33314 3' -58 NC_007605.1 + 116586 0.67 0.807949
Target:  5'- aGGgagUGGugUGCGCCCUUacaggCAACUa- -3'
miRNA:   3'- gCCa--GCCugACGCGGGGGa----GUUGAau -5'
33314 3' -58 NC_007605.1 + 109390 0.67 0.807949
Target:  5'- aCGGUUGGcggaUGCGUCCCCgCAgaugaGCUUAc -3'
miRNA:   3'- -GCCAGCCug--ACGCGGGGGaGU-----UGAAU- -5'
33314 3' -58 NC_007605.1 + 77321 0.68 0.724711
Target:  5'- uGG-CGGACUGCGCCUUUaggcgUAACUUGu -3'
miRNA:   3'- gCCaGCCUGACGCGGGGGa----GUUGAAU- -5'
33314 3' -58 NC_007605.1 + 159842 0.69 0.685334
Target:  5'- aGG-CGGACUGCGCCgccgCCUUCAcgGCg-- -3'
miRNA:   3'- gCCaGCCUGACGCGG----GGGAGU--UGaau -5'
33314 3' -58 NC_007605.1 + 61034 1.07 0.00289
Target:  5'- gCGGUCGGACUGCGCCCCCUCAACUUAg -3'
miRNA:   3'- -GCCAGCCUGACGCGGGGGAGUUGAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.