miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33314 5' -62.4 NC_007605.1 + 13228 0.66 0.662726
Target:  5'- gGGCGAGGaaccggccuCUGGGGcCGCccGGGcuGCCGGg -3'
miRNA:   3'- -CCGUUCC---------GGCCCCuGCG--UCCu-CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 33878 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 27740 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 21602 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 24671 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 18533 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 12395 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 105870 0.66 0.662726
Target:  5'- gGGCGAGGCCGGccuucuGGcAC-CGGGcGCCa- -3'
miRNA:   3'- -CCGUUCCGGCC------CC-UGcGUCCuCGGcu -5'
33314 5' -62.4 NC_007605.1 + 22435 0.66 0.662726
Target:  5'- gGGCGAGGaaccggccuCUGGGGcCGCccGGGcuGCCGGg -3'
miRNA:   3'- -CCGUUCC---------GGCCCCuGCG--UCCu-CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 34711 0.66 0.662726
Target:  5'- gGGCGAGGaaccggccuCUGGGGcCGCccGGGcuGCCGGg -3'
miRNA:   3'- -CCGUUCC---------GGCCCCuGCG--UCCu-CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 40176 0.66 0.662726
Target:  5'- aGCAGGGa-GGGGGCGUcccGGGAccccagcccccaGCCGGc -3'
miRNA:   3'- cCGUUCCggCCCCUGCG---UCCU------------CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 30809 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 56646 0.66 0.662726
Target:  5'- gGGCGgagaucaggAGGCgGGGGAaggaGgAGGAGaacCCGAg -3'
miRNA:   3'- -CCGU---------UCCGgCCCCUg---CgUCCUC---GGCU- -5'
33314 5' -62.4 NC_007605.1 + 28573 0.66 0.662726
Target:  5'- gGGCGAGGaaccggccuCUGGGGcCGCccGGGcuGCCGGg -3'
miRNA:   3'- -CCGUUCC---------GGCCCCuGCG--UCCu-CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 19366 0.66 0.662726
Target:  5'- gGGCGAGGaaccggccuCUGGGGcCGCccGGGcuGCCGGg -3'
miRNA:   3'- -CCGUUCC---------GGCCCCuGCG--UCCu-CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 25504 0.66 0.662726
Target:  5'- gGGCGAGGaaccggccuCUGGGGcCGCccGGGcuGCCGGg -3'
miRNA:   3'- -CCGUUCC---------GGCCCCuGCG--UCCu-CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 16297 0.66 0.662726
Target:  5'- gGGCGAGGaaccggccuCUGGGGcCGCccGGGcuGCCGGg -3'
miRNA:   3'- -CCGUUCC---------GGCCCCuGCG--UCCu-CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 15464 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 57362 0.66 0.661759
Target:  5'- aGCAGGaggaggaGCCGGGGuagcugaugGCAGGGGCUGc -3'
miRNA:   3'- cCGUUC-------CGGCCCCug-------CGUCCUCGGCu -5'
33314 5' -62.4 NC_007605.1 + 58563 0.66 0.659823
Target:  5'- gGGCGGGGgugcCCGGGGcCGCauccuucuggcaguGGGGGUCa- -3'
miRNA:   3'- -CCGUUCC----GGCCCCuGCG--------------UCCUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.