miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 167451 0.66 0.676162
Target:  5'- cCGCCaccaacgCCCCUGcguUGAacccaCCCCUCCUACa -3'
miRNA:   3'- -GCGGga-----GGGGAC---AUUc----GGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 87715 0.66 0.673242
Target:  5'- cCGCgCCUCCCaCcGUGAGUCcuucggauacugggCCUCCUGCc -3'
miRNA:   3'- -GCG-GGAGGG-GaCAUUCGG--------------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 119296 0.66 0.672268
Target:  5'- aCGCCCcuuaCCCCgaagcaccuuGGCCCCCaCCgGCa -3'
miRNA:   3'- -GCGGGa---GGGGacau------UCGGGGG-GGaUG- -5'
33315 3' -62.2 NC_007605.1 + 100318 0.66 0.67032
Target:  5'- uGCCCgaguacuggcUCCCCcGgccgcaaauucuGCCCCCCuCUGCu -3'
miRNA:   3'- gCGGG----------AGGGGaCauu---------CGGGGGG-GAUG- -5'
33315 3' -62.2 NC_007605.1 + 31611 0.66 0.666419
Target:  5'- gGCCCggaUCCCCccaccGGCCcuucucucuguCCCCCUGCu -3'
miRNA:   3'- gCGGG---AGGGGacau-UCGG-----------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 34680 0.66 0.666419
Target:  5'- gGCCCggaUCCCCccaccGGCCcuucucucuguCCCCCUGCu -3'
miRNA:   3'- gCGGG---AGGGGacau-UCGG-----------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 28542 0.66 0.666419
Target:  5'- gGCCCggaUCCCCccaccGGCCcuucucucuguCCCCCUGCu -3'
miRNA:   3'- gCGGG---AGGGGacau-UCGG-----------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 25473 0.66 0.666419
Target:  5'- gGCCCggaUCCCCccaccGGCCcuucucucuguCCCCCUGCu -3'
miRNA:   3'- gCGGG---AGGGGacau-UCGG-----------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 16266 0.66 0.666419
Target:  5'- gGCCCggaUCCCCccaccGGCCcuucucucuguCCCCCUGCu -3'
miRNA:   3'- gCGGG---AGGGGacau-UCGG-----------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 22404 0.66 0.666419
Target:  5'- gGCCCggaUCCCCccaccGGCCcuucucucuguCCCCCUGCu -3'
miRNA:   3'- gCGGG---AGGGGacau-UCGG-----------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 13197 0.66 0.666419
Target:  5'- gGCCCggaUCCCCccaccGGCCcuucucucuguCCCCCUGCu -3'
miRNA:   3'- gCGGG---AGGGGacau-UCGG-----------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 19335 0.66 0.666419
Target:  5'- gGCCCggaUCCCCccaccGGCCcuucucucuguCCCCCUGCu -3'
miRNA:   3'- gCGGG---AGGGGacau-UCGG-----------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 97071 0.66 0.65665
Target:  5'- gGCCUUCUCCUGggucaucugcgGGGCCCUgCUCUAUc -3'
miRNA:   3'- gCGGGAGGGGACa----------UUCGGGG-GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 63522 0.66 0.65665
Target:  5'- gGCCaUCCgCgucAGGCCCCCaCCUGCc -3'
miRNA:   3'- gCGGgAGGgGacaUUCGGGGG-GGAUG- -5'
33315 3' -62.2 NC_007605.1 + 40016 0.66 0.65665
Target:  5'- -uCCCUCCCCcagGgcguGCCCCgCUUGCc -3'
miRNA:   3'- gcGGGAGGGGa--Cauu-CGGGGgGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 106025 0.66 0.65665
Target:  5'- aCGCCUUCCuCCgcaGUAucuauGCCUCCUgCUACg -3'
miRNA:   3'- -GCGGGAGG-GGa--CAUu----CGGGGGG-GAUG- -5'
33315 3' -62.2 NC_007605.1 + 101333 0.66 0.646864
Target:  5'- gGCCagagaCUCCCgaGUaGAGCCCCCUggGCu -3'
miRNA:   3'- gCGG-----GAGGGgaCA-UUCGGGGGGgaUG- -5'
33315 3' -62.2 NC_007605.1 + 93424 0.66 0.646864
Target:  5'- gGUCCUCCUCUGgacuguGGCCCUCU--GCa -3'
miRNA:   3'- gCGGGAGGGGACau----UCGGGGGGgaUG- -5'
33315 3' -62.2 NC_007605.1 + 95111 0.66 0.646864
Target:  5'- cCGCCguCUCCCCaGUAuGCCCcaucgcuuCCCCaGCg -3'
miRNA:   3'- -GCGG--GAGGGGaCAUuCGGG--------GGGGaUG- -5'
33315 3' -62.2 NC_007605.1 + 159983 0.66 0.637067
Target:  5'- uCGCCC-CCUCUGccuccGGCCgCCCCggGCc -3'
miRNA:   3'- -GCGGGaGGGGACau---UCGGgGGGGa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.