miRNA display CGI


Results 21 - 40 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 93424 0.66 0.646864
Target:  5'- gGUCCUCCUCUGgacuguGGCCCUCU--GCa -3'
miRNA:   3'- gCGGGAGGGGACau----UCGGGGGGgaUG- -5'
33315 3' -62.2 NC_007605.1 + 171380 0.66 0.627266
Target:  5'- cCGCCCgcagCCCCcg-GAGCCCgcggaCCCCg-- -3'
miRNA:   3'- -GCGGGa---GGGGacaUUCGGG-----GGGGaug -5'
33315 3' -62.2 NC_007605.1 + 100318 0.66 0.67032
Target:  5'- uGCCCgaguacuggcUCCCCcGgccgcaaauucuGCCCCCCuCUGCu -3'
miRNA:   3'- gCGGG----------AGGGGaCauu---------CGGGGGG-GAUG- -5'
33315 3' -62.2 NC_007605.1 + 106025 0.66 0.65665
Target:  5'- aCGCCUUCCuCCgcaGUAucuauGCCUCCUgCUACg -3'
miRNA:   3'- -GCGGGAGG-GGa--CAUu----CGGGGGG-GAUG- -5'
33315 3' -62.2 NC_007605.1 + 119296 0.66 0.672268
Target:  5'- aCGCCCcuuaCCCCgaagcaccuuGGCCCCCaCCgGCa -3'
miRNA:   3'- -GCGGGa---GGGGacau------UCGGGGG-GGaUG- -5'
33315 3' -62.2 NC_007605.1 + 15091 0.67 0.568763
Target:  5'- gGCCCUcgggucCCCCUGgaccccGGCCUCagcaaCCCUGCu -3'
miRNA:   3'- gCGGGA------GGGGACau----UCGGGG-----GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 18160 0.67 0.568763
Target:  5'- gGCCCUcgggucCCCCUGgaccccGGCCUCagcaaCCCUGCu -3'
miRNA:   3'- gCGGGA------GGGGACau----UCGGGG-----GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 45285 0.67 0.597911
Target:  5'- gGCCC-CCCgaGcAGGUCCguCCCCUGCc -3'
miRNA:   3'- gCGGGaGGGgaCaUUCGGG--GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 160046 0.67 0.567797
Target:  5'- uCGCCUUCUCCUcagccuccaacagGUgcccGAGCCCCgCCUGg -3'
miRNA:   3'- -GCGGGAGGGGA-------------CA----UUCGGGGgGGAUg -5'
33315 3' -62.2 NC_007605.1 + 12117 0.67 0.568763
Target:  5'- -uUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3'
miRNA:   3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 27367 0.67 0.568763
Target:  5'- gGCCCUcgggucCCCCUGgaccccGGCCUCagcaaCCCUGCu -3'
miRNA:   3'- gCGGGA------GGGGACau----UCGGGG-----GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 151225 0.67 0.588164
Target:  5'- uCGCUCUCCCUggcuuuucccuaUGcGGGCCCgCCCCccgugGCg -3'
miRNA:   3'- -GCGGGAGGGG------------ACaUUCGGG-GGGGa----UG- -5'
33315 3' -62.2 NC_007605.1 + 159781 0.67 0.578446
Target:  5'- aGCgCCUCCUCgc-AGGCCCCCCg--- -3'
miRNA:   3'- gCG-GGAGGGGacaUUCGGGGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 28217 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 25148 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 22079 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 19010 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 30436 0.67 0.568763
Target:  5'- gGCCCUcgggucCCCCUGgaccccGGCCUCagcaaCCCUGCu -3'
miRNA:   3'- gCGGGA------GGGGACau----UCGGGG-----GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 66583 0.67 0.572632
Target:  5'- gGuCCCUCCCCUGggcccuUGcucaugaugucaaccGGCCCCgcaaCCUGCg -3'
miRNA:   3'- gC-GGGAGGGGAC------AU---------------UCGGGGg---GGAUG- -5'
33315 3' -62.2 NC_007605.1 + 104279 0.67 0.578446
Target:  5'- gGCCCUCauuccacggCCCggggGUGgcAGCCCCCuCCUcCa -3'
miRNA:   3'- gCGGGAG---------GGGa---CAU--UCGGGGG-GGAuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.