Results 61 - 80 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 19562 | 0.68 | 0.549526 |
Target: 5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3' miRNA: 3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 27462 | 0.68 | 0.559121 |
Target: 5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3' miRNA: 3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 18255 | 0.68 | 0.559121 |
Target: 5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3' miRNA: 3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 132421 | 0.68 | 0.559121 |
Target: 5'- uGCCCaCCCaCU---GGCCCCCCUUGa -3' miRNA: 3'- gCGGGaGGG-GAcauUCGGGGGGGAUg -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 23583 | 0.68 | 0.501494 |
Target: 5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3' miRNA: 3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 32790 | 0.68 | 0.501494 |
Target: 5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3' miRNA: 3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 33600 | 0.68 | 0.559121 |
Target: 5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3' miRNA: 3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 40464 | 0.68 | 0.53618 |
Target: 5'- gGUCCUCCCCcGUGaacggggcgcgcugGGCCgcggcugCCCCCUGg -3' miRNA: 3'- gCGGGAGGGGaCAU--------------UCGG-------GGGGGAUg -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 11359 | 0.68 | 0.549526 |
Target: 5'- cCGCCCguaggaCCCCUuUGcccAGCCCCgCCUGg -3' miRNA: 3'- -GCGGGa-----GGGGAcAU---UCGGGGgGGAUg -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 16493 | 0.68 | 0.549526 |
Target: 5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3' miRNA: 3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 13424 | 0.68 | 0.549526 |
Target: 5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3' miRNA: 3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 59289 | 0.68 | 0.530494 |
Target: 5'- cCGCCuCUCCUCUGUcuGGGCCgCCgCCg-- -3' miRNA: 3'- -GCGG-GAGGGGACA--UUCGGgGG-GGaug -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 35222 | 0.68 | 0.530494 |
Target: 5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3' miRNA: 3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 32153 | 0.68 | 0.530494 |
Target: 5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3' miRNA: 3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 29084 | 0.68 | 0.530494 |
Target: 5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3' miRNA: 3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 26015 | 0.68 | 0.530494 |
Target: 5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3' miRNA: 3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 21324 | 0.68 | 0.559121 |
Target: 5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3' miRNA: 3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 16809 | 0.68 | 0.530494 |
Target: 5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3' miRNA: 3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 13740 | 0.68 | 0.530494 |
Target: 5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3' miRNA: 3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 108415 | 0.68 | 0.502419 |
Target: 5'- aGCCCcucguugguuUCCCCgc-AGGCCCUCCCUu- -3' miRNA: 3'- gCGGG----------AGGGGacaUUCGGGGGGGAug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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