Results 81 - 100 of 143 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 31838 | 0.68 | 0.549526 |
Target: 5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3' miRNA: 3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 15186 | 0.68 | 0.559121 |
Target: 5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3' miRNA: 3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 18255 | 0.68 | 0.559121 |
Target: 5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3' miRNA: 3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 21324 | 0.68 | 0.559121 |
Target: 5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3' miRNA: 3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 27462 | 0.68 | 0.559121 |
Target: 5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3' miRNA: 3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 30531 | 0.68 | 0.559121 |
Target: 5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3' miRNA: 3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 16493 | 0.68 | 0.549526 |
Target: 5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3' miRNA: 3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 33600 | 0.68 | 0.559121 |
Target: 5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3' miRNA: 3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 13424 | 0.68 | 0.549526 |
Target: 5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3' miRNA: 3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 59289 | 0.68 | 0.530494 |
Target: 5'- cCGCCuCUCCUCUGUcuGGGCCgCCgCCg-- -3' miRNA: 3'- -GCGG-GAGGGGACA--UUCGGgGG-GGaug -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 35222 | 0.68 | 0.530494 |
Target: 5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3' miRNA: 3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 19878 | 0.68 | 0.530494 |
Target: 5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3' miRNA: 3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 26015 | 0.68 | 0.530494 |
Target: 5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3' miRNA: 3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 48649 | 0.69 | 0.484067 |
Target: 5'- gGCCCcccggCCCCcacGAGCuCCuCCCCUACg -3' miRNA: 3'- gCGGGa----GGGGacaUUCG-GG-GGGGAUG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 23036 | 0.69 | 0.493204 |
Target: 5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3' miRNA: 3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 19967 | 0.69 | 0.493204 |
Target: 5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3' miRNA: 3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 13830 | 0.69 | 0.493204 |
Target: 5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3' miRNA: 3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 16899 | 0.69 | 0.493204 |
Target: 5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3' miRNA: 3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 133497 | 0.69 | 0.457162 |
Target: 5'- gCGCCCUCCCgUGgaggGGGaCCUgaCCUGCa -3' miRNA: 3'- -GCGGGAGGGgACa---UUC-GGGggGGAUG- -5' |
|||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 130449 | 0.69 | 0.466043 |
Target: 5'- gGCCUgaauUCCCCUGccugcaugcuUAGuGCCCCCCUUGa -3' miRNA: 3'- gCGGG----AGGGGAC----------AUU-CGGGGGGGAUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home