Results 1 - 20 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33315 | 3' | -62.2 | NC_007605.1 | + | 61430 | 1.07 | 0.001197 |
Target: 5'- gGCCCUCCCCUGUAAGCCCCCCCUACu -3' miRNA: 3'- gCGGGAGGGGACAUUCGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96408 | 0.76 | 0.185299 |
Target: 5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCu -3' miRNA: 3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96063 | 0.76 | 0.185299 |
Target: 5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCu -3' miRNA: 3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96588 | 0.75 | 0.203859 |
Target: 5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3' miRNA: 3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96687 | 0.75 | 0.203859 |
Target: 5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3' miRNA: 3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96486 | 0.75 | 0.203859 |
Target: 5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCu -3' miRNA: 3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96180 | 0.75 | 0.203859 |
Target: 5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3' miRNA: 3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96225 | 0.75 | 0.203859 |
Target: 5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3' miRNA: 3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96261 | 0.75 | 0.203859 |
Target: 5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3' miRNA: 3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96306 | 0.75 | 0.203859 |
Target: 5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3' miRNA: 3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96342 | 0.75 | 0.203859 |
Target: 5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3' miRNA: 3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96456 | 0.75 | 0.203859 |
Target: 5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCu -3' miRNA: 3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96636 | 0.75 | 0.224011 |
Target: 5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCc -3' miRNA: 3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96126 | 0.75 | 0.203859 |
Target: 5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3' miRNA: 3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96534 | 0.75 | 0.224011 |
Target: 5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCc -3' miRNA: 3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 54059 | 0.75 | 0.224011 |
Target: 5'- cCGCCCaaagCCCCUGUccAGGCUCCCCUc-- -3' miRNA: 3'- -GCGGGa---GGGGACA--UUCGGGGGGGaug -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 96375 | 0.73 | 0.269381 |
Target: 5'- uGCCC-CUCCUGccccuccuGCCCCUCCUGCu -3' miRNA: 3'- gCGGGaGGGGACauu-----CGGGGGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 37424 | 0.73 | 0.263327 |
Target: 5'- uGCCCUugCCCCUGccccuGCCCcugCCCCUGCc -3' miRNA: 3'- gCGGGA--GGGGACauu--CGGG---GGGGAUG- -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 136969 | 0.73 | 0.269381 |
Target: 5'- gCGUCCUCCCCcgGgaauAGCCCCCCg--- -3' miRNA: 3'- -GCGGGAGGGGa-Cau--UCGGGGGGgaug -5' |
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33315 | 3' | -62.2 | NC_007605.1 | + | 90251 | 0.73 | 0.275546 |
Target: 5'- cCGCCC-CUCCU-UGAGCCCCuCCUUACc -3' miRNA: 3'- -GCGGGaGGGGAcAUUCGGGG-GGGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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