miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 27462 0.68 0.559121
Target:  5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3'
miRNA:   3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 15186 0.68 0.559121
Target:  5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3'
miRNA:   3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 18255 0.68 0.559121
Target:  5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3'
miRNA:   3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 21324 0.68 0.559121
Target:  5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3'
miRNA:   3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 24393 0.68 0.559121
Target:  5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3'
miRNA:   3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 168988 0.68 0.511709
Target:  5'- gGCCCgcgacggcCCCCUcgAGGaCCCCCCCUc- -3'
miRNA:   3'- gCGGGa-------GGGGAcaUUC-GGGGGGGAug -5'
33315 3' -62.2 NC_007605.1 + 94994 0.67 0.597911
Target:  5'- gGaCCUCCCCUGcu-GUUCCCCCa-- -3'
miRNA:   3'- gCgGGAGGGGACauuCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 19010 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 31286 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 27367 0.67 0.568763
Target:  5'- gGCCCUcgggucCCCCUGgaccccGGCCUCagcaaCCCUGCu -3'
miRNA:   3'- gCGGGA------GGGGACau----UCGGGG-----GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 82554 0.67 0.597911
Target:  5'- gGCCCUgCCCUc-AGGCCCCCgaguggCCUGu -3'
miRNA:   3'- gCGGGAgGGGAcaUUCGGGGG------GGAUg -5'
33315 3' -62.2 NC_007605.1 + 33505 0.67 0.568763
Target:  5'- gGCCCUcgggucCCCCUGgaccccGGCCUCagcaaCCCUGCu -3'
miRNA:   3'- gCGGGA------GGGGACau----UCGGGG-----GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 28217 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 25148 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 22079 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 12873 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 34355 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 159781 0.67 0.578446
Target:  5'- aGCgCCUCCUCgc-AGGCCCCCCg--- -3'
miRNA:   3'- gCG-GGAGGGGacaUUCGGGGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 151115 0.67 0.578446
Target:  5'- aGCCUgCCCCUcGgcGGCCCgugCCCCaGCu -3'
miRNA:   3'- gCGGGaGGGGA-CauUCGGG---GGGGaUG- -5'
33315 3' -62.2 NC_007605.1 + 30436 0.67 0.568763
Target:  5'- gGCCCUcgggucCCCCUGgaccccGGCCUCagcaaCCCUGCu -3'
miRNA:   3'- gCGGGA------GGGGACau----UCGGGG-----GGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.