miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 61430 1.07 0.001197
Target:  5'- gGCCCUCCCCUGUAAGCCCCCCCUACu -3'
miRNA:   3'- gCGGGAGGGGACAUUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96408 0.76 0.185299
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96063 0.76 0.185299
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96342 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96306 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96261 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96456 0.75 0.203859
Target:  5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96687 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96588 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96486 0.75 0.203859
Target:  5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96225 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96180 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96126 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96534 0.75 0.224011
Target:  5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 54059 0.75 0.224011
Target:  5'- cCGCCCaaagCCCCUGUccAGGCUCCCCUc-- -3'
miRNA:   3'- -GCGGGa---GGGGACA--UUCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 96636 0.75 0.224011
Target:  5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 37424 0.73 0.263327
Target:  5'- uGCCCUugCCCCUGccccuGCCCcugCCCCUGCc -3'
miRNA:   3'- gCGGGA--GGGGACauu--CGGG---GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 136969 0.73 0.269381
Target:  5'- gCGUCCUCCCCcgGgaauAGCCCCCCg--- -3'
miRNA:   3'- -GCGGGAGGGGa-Cau--UCGGGGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 96375 0.73 0.269381
Target:  5'- uGCCC-CUCCUGccccuccuGCCCCUCCUGCu -3'
miRNA:   3'- gCGGGaGGGGACauu-----CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 90251 0.73 0.275546
Target:  5'- cCGCCC-CUCCU-UGAGCCCCuCCUUACc -3'
miRNA:   3'- -GCGGGaGGGGAcAUUCGGGG-GGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.