miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 63420 0.72 0.304015
Target:  5'- cCGCCgCUuccacaacuucaucaCCCCUGUGGGCCCCCUg--- -3'
miRNA:   3'- -GCGG-GA---------------GGGGACAUUCGGGGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 51481 0.72 0.308068
Target:  5'- gGCCCUCCCagcccacaGAGCCCCCUCUu- -3'
miRNA:   3'- gCGGGAGGGgaca----UUCGGGGGGGAug -5'
33315 3' -62.2 NC_007605.1 + 53387 0.72 0.328949
Target:  5'- gCGCCaggCCCCUGgcAGCCUCCaCC-ACg -3'
miRNA:   3'- -GCGGga-GGGGACauUCGGGGG-GGaUG- -5'
33315 3' -62.2 NC_007605.1 + 40361 0.72 0.336137
Target:  5'- aCGcCCCUCCCucaCUGccc-CCCCCCCUGCc -3'
miRNA:   3'- -GC-GGGAGGG---GACauucGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 170573 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 120505 0.72 0.336137
Target:  5'- gGCCCUCCCggagGUGccagGGCCCCuuggcuuggCCCUGCu -3'
miRNA:   3'- gCGGGAGGGga--CAU----UCGGGG---------GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 171110 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 170050 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 169513 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 61064 0.72 0.34344
Target:  5'- gGcCCCUCCgaugCCUGgGAGUCCCCCCagGCg -3'
miRNA:   3'- gC-GGGAGG----GGACaUUCGGGGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 151960 0.71 0.373781
Target:  5'- gCGCCUUCUCCUGguuuauGCUgUCCCUGCc -3'
miRNA:   3'- -GCGGGAGGGGACauu---CGGgGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96723 0.71 0.389619
Target:  5'- cCGgCCUCCaccuCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- -GCgGGAGG----GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 148744 0.7 0.409194
Target:  5'- aGgCCUCCCUgGUGAGCCCUugccgcuccccgcauUCCUGCu -3'
miRNA:   3'- gCgGGAGGGGaCAUUCGGGG---------------GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 160021 0.7 0.414183
Target:  5'- gCGCCCUCCUCUG--GGCCgCCCg--- -3'
miRNA:   3'- -GCGGGAGGGGACauUCGGgGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 169507 0.7 0.439677
Target:  5'- aGCCCUCUuagccgCCUcacccGCCUCCCCUACg -3'
miRNA:   3'- gCGGGAGG------GGAcauu-CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 91630 0.69 0.451877
Target:  5'- gGCCCuuccauccacccggaUCCCC-GUGGGCCaaccggCCCCUGCc -3'
miRNA:   3'- gCGGG---------------AGGGGaCAUUCGGg-----GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 124231 0.69 0.457162
Target:  5'- gGCUCUCCCCccuuggcggucgUGUAGGUacugaCCCCCUugaGCa -3'
miRNA:   3'- gCGGGAGGGG------------ACAUUCGg----GGGGGA---UG- -5'
33315 3' -62.2 NC_007605.1 + 133497 0.69 0.457162
Target:  5'- gCGCCCUCCCgUGgaggGGGaCCUgaCCUGCa -3'
miRNA:   3'- -GCGGGAGGGgACa---UUC-GGGggGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 130449 0.69 0.466043
Target:  5'- gGCCUgaauUCCCCUGccugcaugcuUAGuGCCCCCCUUGa -3'
miRNA:   3'- gCGGG----AGGGGAC----------AUU-CGGGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 75297 0.69 0.475012
Target:  5'- -cCCCUCCCCUGUcu-CCCCUCgaGCg -3'
miRNA:   3'- gcGGGAGGGGACAuucGGGGGGgaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.