miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 26015 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 19878 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 16809 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 13740 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 29084 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 35222 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 59289 0.68 0.530494
Target:  5'- cCGCCuCUCCUCUGUcuGGGCCgCCgCCg-- -3'
miRNA:   3'- -GCGG-GAGGGGACA--UUCGGgGG-GGaug -5'
33315 3' -62.2 NC_007605.1 + 32153 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 40464 0.68 0.53618
Target:  5'- gGUCCUCCCCcGUGaacggggcgcgcugGGCCgcggcugCCCCCUGg -3'
miRNA:   3'- gCGGGAGGGGaCAU--------------UCGG-------GGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 19562 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 11359 0.68 0.549526
Target:  5'- cCGCCCguaggaCCCCUuUGcccAGCCCCgCCUGg -3'
miRNA:   3'- -GCGGGa-----GGGGAcAU---UCGGGGgGGAUg -5'
33315 3' -62.2 NC_007605.1 + 31838 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 28769 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 25700 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 22631 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 16493 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 13424 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 18255 0.68 0.559121
Target:  5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3'
miRNA:   3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 33600 0.68 0.559121
Target:  5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3'
miRNA:   3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 15186 0.68 0.559121
Target:  5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3'
miRNA:   3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.