miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 159983 0.66 0.637067
Target:  5'- uCGCCC-CCUCUGccuccGGCCgCCCCggGCc -3'
miRNA:   3'- -GCGGGaGGGGACau---UCGGgGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 169783 0.66 0.627266
Target:  5'- cCGCCCgcagCCCCcg-GAGCCCgcggaCCCCg-- -3'
miRNA:   3'- -GCGGGa---GGGGacaUUCGGG-----GGGGaug -5'
33315 3' -62.2 NC_007605.1 + 123515 0.66 0.627266
Target:  5'- uGCCgaCUCCCCU---GGCCCCagCUGCa -3'
miRNA:   3'- gCGG--GAGGGGAcauUCGGGGggGAUG- -5'
33315 3' -62.2 NC_007605.1 + 171380 0.66 0.627266
Target:  5'- cCGCCCgcagCCCCcg-GAGCCCgcggaCCCCg-- -3'
miRNA:   3'- -GCGGGa---GGGGacaUUCGGG-----GGGGaug -5'
33315 3' -62.2 NC_007605.1 + 170320 0.66 0.627266
Target:  5'- cCGCCCgcagCCCCcg-GAGCCCgcggaCCCCg-- -3'
miRNA:   3'- -GCGGGa---GGGGacaUUCGGG-----GGGGaug -5'
33315 3' -62.2 NC_007605.1 + 58339 0.67 0.617469
Target:  5'- gGCCCcggCCUCUGc-GGCCCcggCCUCUGCg -3'
miRNA:   3'- gCGGGa--GGGGACauUCGGG---GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 171081 0.67 0.607681
Target:  5'- uGCCCgcUCCCC-----GCCCCCCUUGg -3'
miRNA:   3'- gCGGG--AGGGGacauuCGGGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 170021 0.67 0.607681
Target:  5'- uGCCCgcUCCCC-----GCCCCCCUUGg -3'
miRNA:   3'- gCGGG--AGGGGacauuCGGGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 170559 0.67 0.607681
Target:  5'- uGCCCgcUCCCC-----GCCCCCCUUGg -3'
miRNA:   3'- gCGGG--AGGGGacauuCGGGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 171619 0.67 0.607681
Target:  5'- uGCCCgcUCCCC-----GCCCCCCUUGg -3'
miRNA:   3'- gCGGG--AGGGGacauuCGGGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 112244 0.67 0.597911
Target:  5'- uGCCugaagacccaCUCCCUuggaUGUGGGCCCuCUUCUACg -3'
miRNA:   3'- gCGG----------GAGGGG----ACAUUCGGG-GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 94994 0.67 0.597911
Target:  5'- gGaCCUCCCCUGcu-GUUCCCCCa-- -3'
miRNA:   3'- gCgGGAGGGGACauuCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 45285 0.67 0.597911
Target:  5'- gGCCC-CCCgaGcAGGUCCguCCCCUGCc -3'
miRNA:   3'- gCGGGaGGGgaCaUUCGGG--GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 82554 0.67 0.597911
Target:  5'- gGCCCUgCCCUc-AGGCCCCCgaguggCCUGu -3'
miRNA:   3'- gCGGGAgGGGAcaUUCGGGGG------GGAUg -5'
33315 3' -62.2 NC_007605.1 + 22079 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 19010 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 12873 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 31286 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 28217 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 25148 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.