miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 59289 0.68 0.530494
Target:  5'- cCGCCuCUCCUCUGUcuGGGCCgCCgCCg-- -3'
miRNA:   3'- -GCGG-GAGGGGACA--UUCGGgGG-GGaug -5'
33315 3' -62.2 NC_007605.1 + 35222 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 32153 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 106653 0.68 0.520129
Target:  5'- cCGCCgCUuggaggcUCCCUG-GAGCCCCCCgUGg -3'
miRNA:   3'- -GCGG-GA-------GGGGACaUUCGGGGGGgAUg -5'
33315 3' -62.2 NC_007605.1 + 168988 0.68 0.511709
Target:  5'- gGCCCgcgacggcCCCCUcgAGGaCCCCCCCUc- -3'
miRNA:   3'- gCGGGa-------GGGGAcaUUC-GGGGGGGAug -5'
33315 3' -62.2 NC_007605.1 + 108415 0.68 0.502419
Target:  5'- aGCCCcucguugguuUCCCCgc-AGGCCCUCCCUu- -3'
miRNA:   3'- gCGGG----------AGGGGacaUUCGGGGGGGAug -5'
33315 3' -62.2 NC_007605.1 + 14376 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 17445 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 20514 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 23583 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 26652 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 29721 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 32790 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 13830 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 19967 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 23036 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 16899 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 29174 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 32243 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 22947 0.69 0.493204
Target:  5'- aGCCCcuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa------GGGGACauUCGG--------GGGGGa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.