miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 19562 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 19878 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 19967 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 20514 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 21229 0.67 0.568763
Target:  5'- gGCCCUcgggucCCCCUGgaccccGGCCUCagcaaCCCUGCu -3'
miRNA:   3'- gCGGGA------GGGGACau----UCGGGG-----GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 21324 0.68 0.559121
Target:  5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3'
miRNA:   3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 22079 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 22404 0.66 0.666419
Target:  5'- gGCCCggaUCCCCccaccGGCCcuucucucuguCCCCCUGCu -3'
miRNA:   3'- gCGGG---AGGGGacau-UCGG-----------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 22631 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 22947 0.69 0.493204
Target:  5'- aGCCCcuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 23036 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 23583 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 24298 0.67 0.568763
Target:  5'- gGCCCUcgggucCCCCUGgaccccGGCCUCagcaaCCCUGCu -3'
miRNA:   3'- gCGGGA------GGGGACau----UCGGGG-----GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 24393 0.68 0.559121
Target:  5'- -aUCCUCCCCcgGUccccaguaGGGCcgccugCCCCCCUGCa -3'
miRNA:   3'- gcGGGAGGGGa-CA--------UUCG------GGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 25148 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 25473 0.66 0.666419
Target:  5'- gGCCCggaUCCCCccaccGGCCcuucucucuguCCCCCUGCu -3'
miRNA:   3'- gCGGG---AGGGGacau-UCGG-----------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 25700 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 26015 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 26105 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 26652 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.