miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 35222 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 37424 0.73 0.263327
Target:  5'- uGCCCUugCCCCUGccccuGCCCcugCCCCUGCc -3'
miRNA:   3'- gCGGGA--GGGGACauu--CGGG---GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 40016 0.66 0.65665
Target:  5'- -uCCCUCCCCcagGgcguGCCCCgCUUGCc -3'
miRNA:   3'- gcGGGAGGGGa--Cauu-CGGGGgGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 40361 0.72 0.336137
Target:  5'- aCGcCCCUCCCucaCUGccc-CCCCCCCUGCc -3'
miRNA:   3'- -GC-GGGAGGG---GACauucGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 40464 0.68 0.53618
Target:  5'- gGUCCUCCCCcGUGaacggggcgcgcugGGCCgcggcugCCCCCUGg -3'
miRNA:   3'- gCGGGAGGGGaCAU--------------UCGG-------GGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 45285 0.67 0.597911
Target:  5'- gGCCC-CCCgaGcAGGUCCguCCCCUGCc -3'
miRNA:   3'- gCGGGaGGGgaCaUUCGGG--GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 48649 0.69 0.484067
Target:  5'- gGCCCcccggCCCCcacGAGCuCCuCCCCUACg -3'
miRNA:   3'- gCGGGa----GGGGacaUUCG-GG-GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 50875 0.67 0.588164
Target:  5'- gGCCCUCCgCCaccc-GCCUCCCC-ACg -3'
miRNA:   3'- gCGGGAGG-GGacauuCGGGGGGGaUG- -5'
33315 3' -62.2 NC_007605.1 + 51481 0.72 0.308068
Target:  5'- gGCCCUCCCagcccacaGAGCCCCCUCUu- -3'
miRNA:   3'- gCGGGAGGGgaca----UUCGGGGGGGAug -5'
33315 3' -62.2 NC_007605.1 + 53387 0.72 0.328949
Target:  5'- gCGCCaggCCCCUGgcAGCCUCCaCC-ACg -3'
miRNA:   3'- -GCGGga-GGGGACauUCGGGGG-GGaUG- -5'
33315 3' -62.2 NC_007605.1 + 54059 0.75 0.224011
Target:  5'- cCGCCCaaagCCCCUGUccAGGCUCCCCUc-- -3'
miRNA:   3'- -GCGGGa---GGGGACA--UUCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 58339 0.67 0.617469
Target:  5'- gGCCCcggCCUCUGc-GGCCCcggCCUCUGCg -3'
miRNA:   3'- gCGGGa--GGGGACauUCGGG---GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 59289 0.68 0.530494
Target:  5'- cCGCCuCUCCUCUGUcuGGGCCgCCgCCg-- -3'
miRNA:   3'- -GCGG-GAGGGGACA--UUCGGgGG-GGaug -5'
33315 3' -62.2 NC_007605.1 + 61064 0.72 0.34344
Target:  5'- gGcCCCUCCgaugCCUGgGAGUCCCCCCagGCg -3'
miRNA:   3'- gC-GGGAGG----GGACaUUCGGGGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 61430 1.07 0.001197
Target:  5'- gGCCCUCCCCUGUAAGCCCCCCCUACu -3'
miRNA:   3'- gCGGGAGGGGACAUUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 63420 0.72 0.304015
Target:  5'- cCGCCgCUuccacaacuucaucaCCCCUGUGGGCCCCCUg--- -3'
miRNA:   3'- -GCGG-GA---------------GGGGACAUUCGGGGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 63522 0.66 0.65665
Target:  5'- gGCCaUCCgCgucAGGCCCCCaCCUGCc -3'
miRNA:   3'- gCGGgAGGgGacaUUCGGGGG-GGAUG- -5'
33315 3' -62.2 NC_007605.1 + 66583 0.67 0.572632
Target:  5'- gGuCCCUCCCCUGggcccuUGcucaugaugucaaccGGCCCCgcaaCCUGCg -3'
miRNA:   3'- gC-GGGAGGGGAC------AU---------------UCGGGGg---GGAUG- -5'
33315 3' -62.2 NC_007605.1 + 73927 0.69 0.484067
Target:  5'- gCGCCUUCCCCUGgccucGGCCgaUCUCgUGCg -3'
miRNA:   3'- -GCGGGAGGGGACau---UCGG--GGGGgAUG- -5'
33315 3' -62.2 NC_007605.1 + 75297 0.69 0.475012
Target:  5'- -cCCCUCCCCUGUcu-CCCCUCgaGCg -3'
miRNA:   3'- gcGGGAGGGGACAuucGGGGGGgaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.