miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 82554 0.67 0.597911
Target:  5'- gGCCCUgCCCUc-AGGCCCCCgaguggCCUGu -3'
miRNA:   3'- gCGGGAgGGGAcaUUCGGGGG------GGAUg -5'
33315 3' -62.2 NC_007605.1 + 87715 0.66 0.673242
Target:  5'- cCGCgCCUCCCaCcGUGAGUCcuucggauacugggCCUCCUGCc -3'
miRNA:   3'- -GCG-GGAGGG-GaCAUUCGG--------------GGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 90251 0.73 0.275546
Target:  5'- cCGCCC-CUCCU-UGAGCCCCuCCUUACc -3'
miRNA:   3'- -GCGGGaGGGGAcAUUCGGGG-GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 91630 0.69 0.451877
Target:  5'- gGCCCuuccauccacccggaUCCCC-GUGGGCCaaccggCCCCUGCc -3'
miRNA:   3'- gCGGG---------------AGGGGaCAUUCGGg-----GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 92047 0.66 0.637067
Target:  5'- aGCCCgaccaugCCCCUG-AAGCCCggugCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACaUUCGGGg---GGGaug -5'
33315 3' -62.2 NC_007605.1 + 93424 0.66 0.646864
Target:  5'- gGUCCUCCUCUGgacuguGGCCCUCU--GCa -3'
miRNA:   3'- gCGGGAGGGGACau----UCGGGGGGgaUG- -5'
33315 3' -62.2 NC_007605.1 + 94994 0.67 0.597911
Target:  5'- gGaCCUCCCCUGcu-GUUCCCCCa-- -3'
miRNA:   3'- gCgGGAGGGGACauuCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 95111 0.66 0.646864
Target:  5'- cCGCCguCUCCCCaGUAuGCCCcaucgcuuCCCCaGCg -3'
miRNA:   3'- -GCGG--GAGGGGaCAUuCGGG--------GGGGaUG- -5'
33315 3' -62.2 NC_007605.1 + 95665 0.68 0.559121
Target:  5'- uGCCC-CCUCcaacAGCCCCCCCa-- -3'
miRNA:   3'- gCGGGaGGGGacauUCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 96063 0.76 0.185299
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96126 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96180 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96225 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96261 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96306 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96342 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96375 0.73 0.269381
Target:  5'- uGCCC-CUCCUGccccuccuGCCCCUCCUGCu -3'
miRNA:   3'- gCGGGaGGGGACauu-----CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96408 0.76 0.185299
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96456 0.75 0.203859
Target:  5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96486 0.75 0.203859
Target:  5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.