miRNA display CGI


Results 101 - 120 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 96534 0.75 0.224011
Target:  5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96588 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96636 0.75 0.224011
Target:  5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96687 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96723 0.71 0.389619
Target:  5'- cCGgCCUCCaccuCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- -GCgGGAGG----GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 97071 0.66 0.65665
Target:  5'- gGCCUUCUCCUGggucaucugcgGGGCCCUgCUCUAUc -3'
miRNA:   3'- gCGGGAGGGGACa----------UUCGGGG-GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 100318 0.66 0.67032
Target:  5'- uGCCCgaguacuggcUCCCCcGgccgcaaauucuGCCCCCCuCUGCu -3'
miRNA:   3'- gCGGG----------AGGGGaCauu---------CGGGGGG-GAUG- -5'
33315 3' -62.2 NC_007605.1 + 101333 0.66 0.646864
Target:  5'- gGCCagagaCUCCCgaGUaGAGCCCCCUggGCu -3'
miRNA:   3'- gCGG-----GAGGGgaCA-UUCGGGGGGgaUG- -5'
33315 3' -62.2 NC_007605.1 + 104279 0.67 0.578446
Target:  5'- gGCCCUCauuccacggCCCggggGUGgcAGCCCCCuCCUcCa -3'
miRNA:   3'- gCGGGAG---------GGGa---CAU--UCGGGGG-GGAuG- -5'
33315 3' -62.2 NC_007605.1 + 106025 0.66 0.65665
Target:  5'- aCGCCUUCCuCCgcaGUAucuauGCCUCCUgCUACg -3'
miRNA:   3'- -GCGGGAGG-GGa--CAUu----CGGGGGG-GAUG- -5'
33315 3' -62.2 NC_007605.1 + 106653 0.68 0.520129
Target:  5'- cCGCCgCUuggaggcUCCCUG-GAGCCCCCCgUGg -3'
miRNA:   3'- -GCGG-GA-------GGGGACaUUCGGGGGGgAUg -5'
33315 3' -62.2 NC_007605.1 + 108415 0.68 0.502419
Target:  5'- aGCCCcucguugguuUCCCCgc-AGGCCCUCCCUu- -3'
miRNA:   3'- gCGGG----------AGGGGacaUUCGGGGGGGAug -5'
33315 3' -62.2 NC_007605.1 + 112244 0.67 0.597911
Target:  5'- uGCCugaagacccaCUCCCUuggaUGUGGGCCCuCUUCUACg -3'
miRNA:   3'- gCGG----------GAGGGG----ACAUUCGGG-GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 119296 0.66 0.672268
Target:  5'- aCGCCCcuuaCCCCgaagcaccuuGGCCCCCaCCgGCa -3'
miRNA:   3'- -GCGGGa---GGGGacau------UCGGGGG-GGaUG- -5'
33315 3' -62.2 NC_007605.1 + 120505 0.72 0.336137
Target:  5'- gGCCCUCCCggagGUGccagGGCCCCuuggcuuggCCCUGCu -3'
miRNA:   3'- gCGGGAGGGga--CAU----UCGGGG---------GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 123515 0.66 0.627266
Target:  5'- uGCCgaCUCCCCU---GGCCCCagCUGCa -3'
miRNA:   3'- gCGG--GAGGGGAcauUCGGGGggGAUG- -5'
33315 3' -62.2 NC_007605.1 + 124231 0.69 0.457162
Target:  5'- gGCUCUCCCCccuuggcggucgUGUAGGUacugaCCCCCUugaGCa -3'
miRNA:   3'- gCGGGAGGGG------------ACAUUCGg----GGGGGA---UG- -5'
33315 3' -62.2 NC_007605.1 + 130449 0.69 0.466043
Target:  5'- gGCCUgaauUCCCCUGccugcaugcuUAGuGCCCCCCUUGa -3'
miRNA:   3'- gCGGG----AGGGGAC----------AUU-CGGGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 132421 0.68 0.559121
Target:  5'- uGCCCaCCCaCU---GGCCCCCCUUGa -3'
miRNA:   3'- gCGGGaGGG-GAcauUCGGGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 133497 0.69 0.457162
Target:  5'- gCGCCCUCCCgUGgaggGGGaCCUgaCCUGCa -3'
miRNA:   3'- -GCGGGAGGGgACa---UUC-GGGggGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.