miRNA display CGI


Results 121 - 140 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 136969 0.73 0.269381
Target:  5'- gCGUCCUCCCCcgGgaauAGCCCCCCg--- -3'
miRNA:   3'- -GCGGGAGGGGa-Cau--UCGGGGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 148744 0.7 0.409194
Target:  5'- aGgCCUCCCUgGUGAGCCCUugccgcuccccgcauUCCUGCu -3'
miRNA:   3'- gCgGGAGGGGaCAUUCGGGG---------------GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 151115 0.67 0.578446
Target:  5'- aGCCUgCCCCUcGgcGGCCCgugCCCCaGCu -3'
miRNA:   3'- gCGGGaGGGGA-CauUCGGG---GGGGaUG- -5'
33315 3' -62.2 NC_007605.1 + 151225 0.67 0.588164
Target:  5'- uCGCUCUCCCUggcuuuucccuaUGcGGGCCCgCCCCccgugGCg -3'
miRNA:   3'- -GCGGGAGGGG------------ACaUUCGGG-GGGGa----UG- -5'
33315 3' -62.2 NC_007605.1 + 151960 0.71 0.373781
Target:  5'- gCGCCUUCUCCUGguuuauGCUgUCCCUGCc -3'
miRNA:   3'- -GCGGGAGGGGACauu---CGGgGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 159781 0.67 0.578446
Target:  5'- aGCgCCUCCUCgc-AGGCCCCCCg--- -3'
miRNA:   3'- gCG-GGAGGGGacaUUCGGGGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 159983 0.66 0.637067
Target:  5'- uCGCCC-CCUCUGccuccGGCCgCCCCggGCc -3'
miRNA:   3'- -GCGGGaGGGGACau---UCGGgGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 160021 0.7 0.414183
Target:  5'- gCGCCCUCCUCUG--GGCCgCCCg--- -3'
miRNA:   3'- -GCGGGAGGGGACauUCGGgGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 160046 0.67 0.567797
Target:  5'- uCGCCUUCUCCUcagccuccaacagGUgcccGAGCCCCgCCUGg -3'
miRNA:   3'- -GCGGGAGGGGA-------------CA----UUCGGGGgGGAUg -5'
33315 3' -62.2 NC_007605.1 + 167451 0.66 0.676162
Target:  5'- cCGCCaccaacgCCCCUGcguUGAacccaCCCCUCCUACa -3'
miRNA:   3'- -GCGGga-----GGGGAC---AUUc----GGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 168988 0.68 0.511709
Target:  5'- gGCCCgcgacggcCCCCUcgAGGaCCCCCCCUc- -3'
miRNA:   3'- gCGGGa-------GGGGAcaUUC-GGGGGGGAug -5'
33315 3' -62.2 NC_007605.1 + 169507 0.7 0.439677
Target:  5'- aGCCCUCUuagccgCCUcacccGCCUCCCCUACg -3'
miRNA:   3'- gCGGGAGG------GGAcauu-CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 169513 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 169783 0.66 0.627266
Target:  5'- cCGCCCgcagCCCCcg-GAGCCCgcggaCCCCg-- -3'
miRNA:   3'- -GCGGGa---GGGGacaUUCGGG-----GGGGaug -5'
33315 3' -62.2 NC_007605.1 + 170021 0.67 0.607681
Target:  5'- uGCCCgcUCCCC-----GCCCCCCUUGg -3'
miRNA:   3'- gCGGG--AGGGGacauuCGGGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 170050 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 170320 0.66 0.627266
Target:  5'- cCGCCCgcagCCCCcg-GAGCCCgcggaCCCCg-- -3'
miRNA:   3'- -GCGGGa---GGGGacaUUCGGG-----GGGGaug -5'
33315 3' -62.2 NC_007605.1 + 170559 0.67 0.607681
Target:  5'- uGCCCgcUCCCC-----GCCCCCCUUGg -3'
miRNA:   3'- gCGGG--AGGGGacauuCGGGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 170573 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 171081 0.67 0.607681
Target:  5'- uGCCCgcUCCCC-----GCCCCCCUUGg -3'
miRNA:   3'- gCGGG--AGGGGacauuCGGGGGGGAUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.