miRNA display CGI


Results 1 - 20 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 13740 0.68 0.530494
Target:  5'- aGCCCcuuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa-------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 16899 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 19967 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 23036 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 26105 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 29174 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 32243 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 22947 0.69 0.493204
Target:  5'- aGCCCcuuugccCCCCUGgcGGCCcagcccgaCCCCCggGCg -3'
miRNA:   3'- gCGGGa------GGGGACauUCGG--------GGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 108415 0.68 0.502419
Target:  5'- aGCCCcucguugguuUCCCCgc-AGGCCCUCCCUu- -3'
miRNA:   3'- gCGGG----------AGGGGacaUUCGGGGGGGAug -5'
33315 3' -62.2 NC_007605.1 + 13830 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 75297 0.69 0.475012
Target:  5'- -cCCCUCCCCUGUcu-CCCCUCgaGCg -3'
miRNA:   3'- gcGGGAGGGGACAuucGGGGGGgaUG- -5'
33315 3' -62.2 NC_007605.1 + 124231 0.69 0.457162
Target:  5'- gGCUCUCCCCccuuggcggucgUGUAGGUacugaCCCCCUugaGCa -3'
miRNA:   3'- gCGGGAGGGG------------ACAUUCGg----GGGGGA---UG- -5'
33315 3' -62.2 NC_007605.1 + 63420 0.72 0.304015
Target:  5'- cCGCCgCUuccacaacuucaucaCCCCUGUGGGCCCCCUg--- -3'
miRNA:   3'- -GCGG-GA---------------GGGGACAUUCGGGGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 53387 0.72 0.328949
Target:  5'- gCGCCaggCCCCUGgcAGCCUCCaCC-ACg -3'
miRNA:   3'- -GCGGga-GGGGACauUCGGGGG-GGaUG- -5'
33315 3' -62.2 NC_007605.1 + 169513 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 170050 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 170573 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 171110 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 148744 0.7 0.409194
Target:  5'- aGgCCUCCCUgGUGAGCCCUugccgcuccccgcauUCCUGCu -3'
miRNA:   3'- gCgGGAGGGGaCAUUCGGGG---------------GGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 160021 0.7 0.414183
Target:  5'- gCGCCCUCCUCUG--GGCCgCCCg--- -3'
miRNA:   3'- -GCGGGAGGGGACauUCGGgGGGgaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.