miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 61064 0.72 0.34344
Target:  5'- gGcCCCUCCgaugCCUGgGAGUCCCCCCagGCg -3'
miRNA:   3'- gC-GGGAGG----GGACaUUCGGGGGGGa-UG- -5'
33315 3' -62.2 NC_007605.1 + 51481 0.72 0.308068
Target:  5'- gGCCCUCCCagcccacaGAGCCCCCUCUu- -3'
miRNA:   3'- gCGGGAGGGgaca----UUCGGGGGGGAug -5'
33315 3' -62.2 NC_007605.1 + 96225 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96687 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 23583 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 133497 0.69 0.457162
Target:  5'- gCGCCCUCCCgUGgaggGGGaCCUgaCCUGCa -3'
miRNA:   3'- -GCGGGAGGGgACa---UUC-GGGggGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 136969 0.73 0.269381
Target:  5'- gCGUCCUCCCCcgGgaauAGCCCCCCg--- -3'
miRNA:   3'- -GCGGGAGGGGa-Cau--UCGGGGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 96063 0.76 0.185299
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 91630 0.69 0.451877
Target:  5'- gGCCCuuccauccacccggaUCCCC-GUGGGCCaaccggCCCCUGCc -3'
miRNA:   3'- gCGGG---------------AGGGGaCAUUCGGg-----GGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96408 0.76 0.185299
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCu -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96375 0.73 0.269381
Target:  5'- uGCCC-CUCCUGccccuccuGCCCCUCCUGCu -3'
miRNA:   3'- gCGGGaGGGGACauu-----CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 151960 0.71 0.373781
Target:  5'- gCGCCUUCUCCUGguuuauGCUgUCCCUGCc -3'
miRNA:   3'- -GCGGGAGGGGACauu---CGGgGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96534 0.75 0.224011
Target:  5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96180 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96342 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96588 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 168988 0.68 0.511709
Target:  5'- gGCCCgcgacggcCCCCUcgAGGaCCCCCCCUc- -3'
miRNA:   3'- gCGGGa-------GGGGAcaUUC-GGGGGGGAug -5'
33315 3' -62.2 NC_007605.1 + 20514 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 32790 0.68 0.501494
Target:  5'- aGCCCacUCCCCUGUcuggGGGCuuauuccucuuuuCCCCUCUAa -3'
miRNA:   3'- gCGGG--AGGGGACA----UUCG-------------GGGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 130449 0.69 0.466043
Target:  5'- gGCCUgaauUCCCCUGccugcaugcuUAGuGCCCCCCUUGa -3'
miRNA:   3'- gCGGG----AGGGGAC----------AUU-CGGGGGGGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.