miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 3' -62.2 NC_007605.1 + 96342 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 96225 0.75 0.203859
Target:  5'- uGcCCCUCCuCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gC-GGGAGG-GGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 40464 0.68 0.53618
Target:  5'- gGUCCUCCCCcGUGaacggggcgcgcugGGCCgcggcugCCCCCUGg -3'
miRNA:   3'- gCGGGAGGGGaCAU--------------UCGG-------GGGGGAUg -5'
33315 3' -62.2 NC_007605.1 + 96534 0.75 0.224011
Target:  5'- uGCCC-CUCCUGcuccuGCCCCUCCUGCc -3'
miRNA:   3'- gCGGGaGGGGACauu--CGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 59289 0.68 0.530494
Target:  5'- cCGCCuCUCCUCUGUcuGGGCCgCCgCCg-- -3'
miRNA:   3'- -GCGG-GAGGGGACA--UUCGGgGG-GGaug -5'
33315 3' -62.2 NC_007605.1 + 13424 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 28217 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 171110 0.72 0.336137
Target:  5'- gGCCUUCCCCcGcggccccccAGCCCCCCCg-- -3'
miRNA:   3'- gCGGGAGGGGaCau-------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 19562 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 16493 0.68 0.549526
Target:  5'- -cCCCggcggCCCggUGUcAGUCCCCCCUGCa -3'
miRNA:   3'- gcGGGa----GGGg-ACAuUCGGGGGGGAUG- -5'
33315 3' -62.2 NC_007605.1 + 12873 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 19010 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 22079 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 25148 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 31286 0.67 0.596936
Target:  5'- gCGCCCuccuggucuccgcUCCCCUcUGAGCCCCguuaaaCCCa-- -3'
miRNA:   3'- -GCGGG-------------AGGGGAcAUUCGGGG------GGGaug -5'
33315 3' -62.2 NC_007605.1 + 82554 0.67 0.597911
Target:  5'- gGCCCUgCCCUc-AGGCCCCCgaguggCCUGu -3'
miRNA:   3'- gCGGGAgGGGAcaUUCGGGGG------GGAUg -5'
33315 3' -62.2 NC_007605.1 + 94994 0.67 0.597911
Target:  5'- gGaCCUCCCCUGcu-GUUCCCCCa-- -3'
miRNA:   3'- gCgGGAGGGGACauuCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 159781 0.67 0.578446
Target:  5'- aGCgCCUCCUCgc-AGGCCCCCCg--- -3'
miRNA:   3'- gCG-GGAGGGGacaUUCGGGGGGgaug -5'
33315 3' -62.2 NC_007605.1 + 23036 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5'
33315 3' -62.2 NC_007605.1 + 19967 0.69 0.493204
Target:  5'- aGCCCccucccgCCCCUGUccacugccccGGUCCCCCCa-- -3'
miRNA:   3'- gCGGGa------GGGGACAu---------UCGGGGGGGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.