miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 5' -56.5 NC_007605.1 + 68752 0.66 0.911065
Target:  5'- aAGUAGGGGuccuAGGAGGUGGcGGA-GGUg -3'
miRNA:   3'- cUCGUCCCU----UCUUCCGUCaCCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 78488 0.66 0.911065
Target:  5'- aGGUAGGGGAGguGGUGGUGcucuCGGg -3'
miRNA:   3'- cUCGUCCCUUCuuCCGUCACcu--GCCg -5'
33315 5' -56.5 NC_007605.1 + 162999 0.66 0.911065
Target:  5'- aAGCAGGGucGgcGGCAGgGGucccaGGUc -3'
miRNA:   3'- cUCGUCCCuuCuuCCGUCaCCug---CCG- -5'
33315 5' -56.5 NC_007605.1 + 58540 0.66 0.907445
Target:  5'- cGAGCuuguguccagugauGGGGAGgcGGCGG-GGAcgccCGGUg -3'
miRNA:   3'- -CUCGu-------------CCCUUCuuCCGUCaCCU----GCCG- -5'
33315 5' -56.5 NC_007605.1 + 32182 0.66 0.906834
Target:  5'- -cGUGGGGAGGGguggacgAGGCugggcccgggagccGUGGACGGg -3'
miRNA:   3'- cuCGUCCCUUCU-------UCCGu-------------CACCUGCCg -5'
33315 5' -56.5 NC_007605.1 + 13769 0.66 0.906834
Target:  5'- -cGUGGGGAGGGguggacgAGGCugggcccgggagccGUGGACGGg -3'
miRNA:   3'- cuCGUCCCUUCU-------UCCGu-------------CACCUGCCg -5'
33315 5' -56.5 NC_007605.1 + 26045 0.66 0.906834
Target:  5'- -cGUGGGGAGGGguggacgAGGCugggcccgggagccGUGGACGGg -3'
miRNA:   3'- cuCGUCCCUUCU-------UCCGu-------------CACCUGCCg -5'
33315 5' -56.5 NC_007605.1 + 19907 0.66 0.906834
Target:  5'- -cGUGGGGAGGGguggacgAGGCugggcccgggagccGUGGACGGg -3'
miRNA:   3'- cuCGUCCCUUCU-------UCCGu-------------CACCUGCCg -5'
33315 5' -56.5 NC_007605.1 + 16838 0.66 0.906834
Target:  5'- -cGUGGGGAGGGguggacgAGGCugggcccgggagccGUGGACGGg -3'
miRNA:   3'- cuCGUCCCUUCU-------UCCGu-------------CACCUGCCg -5'
33315 5' -56.5 NC_007605.1 + 22976 0.66 0.906834
Target:  5'- -cGUGGGGAGGGguggacgAGGCugggcccgggagccGUGGACGGg -3'
miRNA:   3'- cuCGUCCCUUCU-------UCCGu-------------CACCUGCCg -5'
33315 5' -56.5 NC_007605.1 + 35251 0.66 0.906834
Target:  5'- -cGUGGGGAGGGguggacgAGGCugggcccgggagccGUGGACGGg -3'
miRNA:   3'- cuCGUCCCUUCU-------UCCGu-------------CACCUGCCg -5'
33315 5' -56.5 NC_007605.1 + 22212 0.66 0.904986
Target:  5'- cAGCc-GGAGGGAccccGGCAGcccGGGCGGCc -3'
miRNA:   3'- cUCGucCCUUCUU----CCGUCa--CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 2762 0.66 0.904986
Target:  5'- aAGCGGGGu-GccGGUcGUGGcCGGCu -3'
miRNA:   3'- cUCGUCCCuuCuuCCGuCACCuGCCG- -5'
33315 5' -56.5 NC_007605.1 + 31419 0.66 0.904986
Target:  5'- cAGCc-GGAGGGAccccGGCAGcccGGGCGGCc -3'
miRNA:   3'- cUCGucCCUUCUU----CCGUCa--CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 13005 0.66 0.904986
Target:  5'- cAGCc-GGAGGGAccccGGCAGcccGGGCGGCc -3'
miRNA:   3'- cUCGucCCUUCUU----CCGUCa--CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 16074 0.66 0.904986
Target:  5'- cAGCc-GGAGGGAccccGGCAGcccGGGCGGCc -3'
miRNA:   3'- cUCGucCCUUCUU----CCGUCa--CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 53882 0.66 0.904986
Target:  5'- uGGGCGGGGAGGAA-GCAGgcuccGGAguucaucguCGGg -3'
miRNA:   3'- -CUCGUCCCUUCUUcCGUCa----CCU---------GCCg -5'
33315 5' -56.5 NC_007605.1 + 19143 0.66 0.904986
Target:  5'- cAGCc-GGAGGGAccccGGCAGcccGGGCGGCc -3'
miRNA:   3'- cUCGucCCUUCUU----CCGUCa--CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 34488 0.66 0.904986
Target:  5'- cAGCc-GGAGGGAccccGGCAGcccGGGCGGCc -3'
miRNA:   3'- cUCGucCCUUCUU----CCGUCa--CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 28350 0.66 0.904986
Target:  5'- cAGCc-GGAGGGAccccGGCAGcccGGGCGGCc -3'
miRNA:   3'- cUCGucCCUUCUU----CCGUCa--CCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.