miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 5' -56.5 NC_007605.1 + 77226 0.66 0.878377
Target:  5'- uGGGCuGGGAcGuuGGCGGgacUGGcACGGUg -3'
miRNA:   3'- -CUCGuCCCUuCuuCCGUC---ACC-UGCCG- -5'
33315 5' -56.5 NC_007605.1 + 53882 0.66 0.904986
Target:  5'- uGGGCGGGGAGGAA-GCAGgcuccGGAguucaucguCGGg -3'
miRNA:   3'- -CUCGUCCCUUCUUcCGUCa----CCU---------GCCg -5'
33315 5' -56.5 NC_007605.1 + 41525 0.66 0.878377
Target:  5'- aGGGCAGGGGcuGuuGGguGcaucUGGaACGGCu -3'
miRNA:   3'- -CUCGUCCCUu-CuuCCguC----ACC-UGCCG- -5'
33315 5' -56.5 NC_007605.1 + 96916 0.66 0.892133
Target:  5'- gGGGuCAGGGugauGGAGGCAGgcgcaaaaaaGGAgGGUg -3'
miRNA:   3'- -CUC-GUCCCuu--CUUCCGUCa---------CCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 61231 0.66 0.898674
Target:  5'- gGAGUAGGGggGGcuuaCAGgGGAgGGCc -3'
miRNA:   3'- -CUCGUCCCuuCUucc-GUCaCCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 6118 0.66 0.878377
Target:  5'- aGGGCAGaGGAcauuGGGCAG-GuGugGGCc -3'
miRNA:   3'- -CUCGUC-CCUucu-UCCGUCaC-CugCCG- -5'
33315 5' -56.5 NC_007605.1 + 68752 0.66 0.911065
Target:  5'- aAGUAGGGGuccuAGGAGGUGGcGGA-GGUg -3'
miRNA:   3'- cUCGUCCCU----UCUUCCGUCaCCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 13005 0.66 0.904986
Target:  5'- cAGCc-GGAGGGAccccGGCAGcccGGGCGGCc -3'
miRNA:   3'- cUCGucCCUUCUU----CCGUCa--CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 168784 0.66 0.904986
Target:  5'- aGAGgGGGGGuccucgAGggGGCcGUcgcgggcccGGugGGCc -3'
miRNA:   3'- -CUCgUCCCU------UCuuCCGuCA---------CCugCCG- -5'
33315 5' -56.5 NC_007605.1 + 58562 0.66 0.878377
Target:  5'- uGGGCGGGGGugcccGGGGccgcauccuucuGGCAGUGGG-GGUc -3'
miRNA:   3'- -CUCGUCCCU-----UCUU------------CCGUCACCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 136754 0.66 0.878377
Target:  5'- cGAGgAGGauGAAGAAGGCGGgGGGCu-- -3'
miRNA:   3'- -CUCgUCC--CUUCUUCCGUCaCCUGccg -5'
33315 5' -56.5 NC_007605.1 + 171376 0.66 0.878377
Target:  5'- gGGGCGGGGAcAGAgAGGCGGUcgcgccccCGGCc -3'
miRNA:   3'- -CUCGUCCCU-UCU-UCCGUCAccu-----GCCG- -5'
33315 5' -56.5 NC_007605.1 + 170316 0.66 0.878377
Target:  5'- gGGGCGGGGAcAGAgAGGCGGUcgcgccccCGGCc -3'
miRNA:   3'- -CUCGUCCCU-UCU-UCCGUCAccu-----GCCG- -5'
33315 5' -56.5 NC_007605.1 + 139056 0.66 0.904365
Target:  5'- cGGgGGGGggGggGGCucuGUaacauuuGGugGGa -3'
miRNA:   3'- cUCgUCCCuuCuuCCGu--CA-------CCugCCg -5'
33315 5' -56.5 NC_007605.1 + 132110 0.66 0.898674
Target:  5'- uGGGCAGGGuAAaGGGGCAcgauGUGuGcCGGCu -3'
miRNA:   3'- -CUCGUCCC-UUcUUCCGU----CAC-CuGCCG- -5'
33315 5' -56.5 NC_007605.1 + 95860 0.66 0.885366
Target:  5'- gGAGCAGGaGggGcAGGaGCAGgaGGAgGGg -3'
miRNA:   3'- -CUCGUCC-CuuC-UUC-CGUCa-CCUgCCg -5'
33315 5' -56.5 NC_007605.1 + 170838 0.66 0.878377
Target:  5'- gGGGCGGGGAcAGAgAGGCGGUcgcgccccCGGCc -3'
miRNA:   3'- -CUCGUCCCU-UCU-UCCGUCAccu-----GCCG- -5'
33315 5' -56.5 NC_007605.1 + 169778 0.66 0.878377
Target:  5'- gGGGCGGGGAcAGAgAGGCGGUcgcgccccCGGCc -3'
miRNA:   3'- -CUCGUCCCU-UCU-UCCGUCAccu-----GCCG- -5'
33315 5' -56.5 NC_007605.1 + 2762 0.66 0.904986
Target:  5'- aAGCGGGGu-GccGGUcGUGGcCGGCu -3'
miRNA:   3'- cUCGUCCCuuCuuCCGuCACCuGCCG- -5'
33315 5' -56.5 NC_007605.1 + 117514 0.66 0.885366
Target:  5'- gGAGgAGGu--GAAGGUAgccGUGGAgGGCa -3'
miRNA:   3'- -CUCgUCCcuuCUUCCGU---CACCUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.