Results 21 - 40 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33315 | 5' | -56.5 | NC_007605.1 | + | 36633 | 0.76 | 0.368137 |
Target: 5'- gGGGCGGGGGuggugguGAAGGUGGUGGAggUGGUg -3' miRNA: 3'- -CUCGUCCCUu------CUUCCGUCACCU--GCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 69900 | 0.76 | 0.373792 |
Target: 5'- uGGGCuaacGGGAGGAAaugaacccagggguGGCAGUGGAUGGg -3' miRNA: 3'- -CUCGu---CCCUUCUU--------------CCGUCACCUGCCg -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 27616 | 0.75 | 0.409797 |
Target: 5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3' miRNA: 3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 15340 | 0.75 | 0.409797 |
Target: 5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3' miRNA: 3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 30685 | 0.75 | 0.409797 |
Target: 5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3' miRNA: 3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 33754 | 0.75 | 0.409797 |
Target: 5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3' miRNA: 3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 24547 | 0.75 | 0.409797 |
Target: 5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3' miRNA: 3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 21478 | 0.75 | 0.409797 |
Target: 5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3' miRNA: 3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 18409 | 0.75 | 0.409797 |
Target: 5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3' miRNA: 3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 12271 | 0.75 | 0.409797 |
Target: 5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3' miRNA: 3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 125583 | 0.75 | 0.418475 |
Target: 5'- uGGGCAccGGGAGGuGGGCAGcguggucagGGugGGCa -3' miRNA: 3'- -CUCGU--CCCUUCuUCCGUCa--------CCugCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 62305 | 0.75 | 0.418475 |
Target: 5'- cGGCGGGGGAGAGGGUgaagaaagcGGUGG-UGGUc -3' miRNA: 3'- cUCGUCCCUUCUUCCG---------UCACCuGCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 136450 | 0.75 | 0.418475 |
Target: 5'- uGGCuGGGucuguGGAGGcCGGUGGugGGCu -3' miRNA: 3'- cUCGuCCCuu---CUUCC-GUCACCugCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 61087 | 0.75 | 0.427263 |
Target: 5'- cGGCcGGGAAGAagGGGCuGUGGACauaGGCc -3' miRNA: 3'- cUCGuCCCUUCU--UCCGuCACCUG---CCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 96594 | 0.75 | 0.445163 |
Target: 5'- aGGcCGGGGucGAGGAGGUAGUGGA-GGCc -3' miRNA: 3'- cUC-GUCCC--UUCUUCCGUCACCUgCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 36575 | 0.74 | 0.463475 |
Target: 5'- uGGUGGGGGugguGggGGUGGUGGugGGg -3' miRNA: 3'- cUCGUCCCUu---CuuCCGUCACCugCCg -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 60622 | 0.74 | 0.463475 |
Target: 5'- uGGCgacggaagAGGaGGAGGAGGCGGUGGuaGCGGUg -3' miRNA: 3'- cUCG--------UCC-CUUCUUCCGUCACC--UGCCG- -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 31825 | 0.73 | 0.500268 |
Target: 5'- gGAGCAGGGGgacagagAGAAGGgcCGGUGGGgGGa -3' miRNA: 3'- -CUCGUCCCU-------UCUUCC--GUCACCUgCCg -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 34894 | 0.73 | 0.500268 |
Target: 5'- gGAGCAGGGGgacagagAGAAGGgcCGGUGGGgGGa -3' miRNA: 3'- -CUCGUCCCU-------UCUUCC--GUCACCUgCCg -5' |
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33315 | 5' | -56.5 | NC_007605.1 | + | 28756 | 0.73 | 0.500268 |
Target: 5'- gGAGCAGGGGgacagagAGAAGGgcCGGUGGGgGGa -3' miRNA: 3'- -CUCGUCCCU-------UCUUCC--GUCACCUgCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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