miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 5' -56.5 NC_007605.1 + 2762 0.66 0.904986
Target:  5'- aAGCGGGGu-GccGGUcGUGGcCGGCu -3'
miRNA:   3'- cUCGUCCCuuCuuCCGuCACCuGCCG- -5'
33315 5' -56.5 NC_007605.1 + 5239 0.67 0.863751
Target:  5'- aGGGCGGGGAAacGAuuaaucAGcGCcacGGUGGcACGGCc -3'
miRNA:   3'- -CUCGUCCCUU--CU------UC-CG---UCACC-UGCCG- -5'
33315 5' -56.5 NC_007605.1 + 6118 0.66 0.878377
Target:  5'- aGGGCAGaGGAcauuGGGCAG-GuGugGGCc -3'
miRNA:   3'- -CUCGUC-CCUucu-UCCGUCaC-CugCCG- -5'
33315 5' -56.5 NC_007605.1 + 10493 0.72 0.609695
Target:  5'- -cGUGGGGAgaacacaGGAAGGUAccUGGGCGGCa -3'
miRNA:   3'- cuCGUCCCU-------UCUUCCGUc-ACCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 12271 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 12328 0.68 0.815114
Target:  5'- -uGCAGGGggGcAGGCGGcccuacuggGGACcGGg -3'
miRNA:   3'- cuCGUCCCuuCuUCCGUCa--------CCUG-CCg -5'
33315 5' -56.5 NC_007605.1 + 12515 0.67 0.832066
Target:  5'- uGGCccuGGGGuaagucuGGGAGGCAGaGGGuCGGCc -3'
miRNA:   3'- cUCG---UCCCu------UCUUCCGUCaCCU-GCCG- -5'
33315 5' -56.5 NC_007605.1 + 13005 0.66 0.904986
Target:  5'- cAGCc-GGAGGGAccccGGCAGcccGGGCGGCc -3'
miRNA:   3'- cUCGucCCUUCUU----CCGUCa--CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 13411 0.73 0.500268
Target:  5'- gGAGCAGGGGgacagagAGAAGGgcCGGUGGGgGGa -3'
miRNA:   3'- -CUCGUCCCU-------UCUUCC--GUCACCUgCCg -5'
33315 5' -56.5 NC_007605.1 + 13570 0.7 0.72184
Target:  5'- cGGUGGGGAggcaagcugAGggGGCucgGGUGGGaGGCg -3'
miRNA:   3'- cUCGUCCCU---------UCuuCCG---UCACCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 13769 0.66 0.906834
Target:  5'- -cGUGGGGAGGGguggacgAGGCugggcccgggagccGUGGACGGg -3'
miRNA:   3'- cuCGUCCCUUCU-------UCCGu-------------CACCUGCCg -5'
33315 5' -56.5 NC_007605.1 + 13823 0.71 0.631084
Target:  5'- uGGGguGGacacAGGggGGCGG-GGAUGGCc -3'
miRNA:   3'- -CUCguCCc---UUCuuCCGUCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 14047 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 15340 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 15397 0.68 0.815114
Target:  5'- -uGCAGGGggGcAGGCGGcccuacuggGGACcGGg -3'
miRNA:   3'- cuCGUCCCuuCuUCCGUCa--------CCUG-CCg -5'
33315 5' -56.5 NC_007605.1 + 15584 0.67 0.832066
Target:  5'- uGGCccuGGGGuaagucuGGGAGGCAGaGGGuCGGCc -3'
miRNA:   3'- cUCG---UCCCu------UCUUCCGUCaCCU-GCCG- -5'
33315 5' -56.5 NC_007605.1 + 16074 0.66 0.904986
Target:  5'- cAGCc-GGAGGGAccccGGCAGcccGGGCGGCc -3'
miRNA:   3'- cUCGucCCUUCUU----CCGUCa--CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 16480 0.73 0.500268
Target:  5'- gGAGCAGGGGgacagagAGAAGGgcCGGUGGGgGGa -3'
miRNA:   3'- -CUCGUCCCU-------UCUUCC--GUCACCUgCCg -5'
33315 5' -56.5 NC_007605.1 + 16639 0.7 0.72184
Target:  5'- cGGUGGGGAggcaagcugAGggGGCucgGGUGGGaGGCg -3'
miRNA:   3'- cUCGUCCCU---------UCuuCCG---UCACCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 16838 0.66 0.906834
Target:  5'- -cGUGGGGAGGGguggacgAGGCugggcccgggagccGUGGACGGg -3'
miRNA:   3'- cuCGUCCCUUCU-------UCCGu-------------CACCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.