miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 5' -56.5 NC_007605.1 + 171376 0.66 0.878377
Target:  5'- gGGGCGGGGAcAGAgAGGCGGUcgcgccccCGGCc -3'
miRNA:   3'- -CUCGUCCCU-UCU-UCCGUCAccu-----GCCG- -5'
33315 5' -56.5 NC_007605.1 + 171298 0.77 0.336964
Target:  5'- -cGCAGGGGGugugucugguGggGGCGGgagcgggGGGCGGCg -3'
miRNA:   3'- cuCGUCCCUU----------CuuCCGUCa------CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 171187 0.78 0.280529
Target:  5'- cGGGCuccgGGGGcuGcGGGCGGUGGAUGGCg -3'
miRNA:   3'- -CUCG----UCCCuuCuUCCGUCACCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 171050 0.69 0.760574
Target:  5'- gGGGCAucGGGggGuGGGGCA-UGGGgGGCc -3'
miRNA:   3'- -CUCGU--CCCuuC-UUCCGUcACCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 170838 0.66 0.878377
Target:  5'- gGGGCGGGGAcAGAgAGGCGGUcgcgccccCGGCc -3'
miRNA:   3'- -CUCGUCCCU-UCU-UCCGUCAccu-----GCCG- -5'
33315 5' -56.5 NC_007605.1 + 170760 0.77 0.336964
Target:  5'- -cGCAGGGGGugugucugguGggGGCGGgagcgggGGGCGGCg -3'
miRNA:   3'- cuCGUCCCUU----------CuuCCGUCa------CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 170650 0.79 0.255247
Target:  5'- cGGGCuccGGGGcuGcGGGCGGUGGAUGGCg -3'
miRNA:   3'- -CUCG---UCCCuuCuUCCGUCACCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 170316 0.66 0.878377
Target:  5'- gGGGCGGGGAcAGAgAGGCGGUcgcgccccCGGCc -3'
miRNA:   3'- -CUCGUCCCU-UCU-UCCGUCAccu-----GCCG- -5'
33315 5' -56.5 NC_007605.1 + 170238 0.77 0.336964
Target:  5'- -cGCAGGGGGugugucugguGggGGCGGgagcgggGGGCGGCg -3'
miRNA:   3'- cuCGUCCCUU----------CuuCCGUCa------CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 170127 0.78 0.280529
Target:  5'- cGGGCuccgGGGGcuGcGGGCGGUGGAUGGCg -3'
miRNA:   3'- -CUCG----UCCCuuCuUCCGUCACCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 169990 0.69 0.760574
Target:  5'- gGGGCAucGGGggGuGGGGCA-UGGGgGGCc -3'
miRNA:   3'- -CUCGU--CCCuuC-UUCCGUcACCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 169778 0.66 0.878377
Target:  5'- gGGGCGGGGAcAGAgAGGCGGUcgcgccccCGGCc -3'
miRNA:   3'- -CUCGUCCCU-UCU-UCCGUCAccu-----GCCG- -5'
33315 5' -56.5 NC_007605.1 + 169700 0.77 0.336964
Target:  5'- -cGCAGGGGGugugucugguGggGGCGGgagcgggGGGCGGCg -3'
miRNA:   3'- cuCGUCCCUU----------CuuCCGUCa------CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 169590 0.78 0.280529
Target:  5'- cGGGCuccgGGGGcuGcGGGCGGUGGAUGGCg -3'
miRNA:   3'- -CUCG----UCCCuuCuUCCGUCACCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 169303 0.7 0.691956
Target:  5'- -cGUAGGGGAGgcGGguGaGG-CGGCu -3'
miRNA:   3'- cuCGUCCCUUCuuCCguCaCCuGCCG- -5'
33315 5' -56.5 NC_007605.1 + 168896 0.67 0.840275
Target:  5'- aGAGCAGuGuGAG-AGGCuuauGUaGGGCGGCu -3'
miRNA:   3'- -CUCGUC-CcUUCuUCCGu---CA-CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 168784 0.66 0.904986
Target:  5'- aGAGgGGGGGuccucgAGggGGCcGUcgcgggcccGGugGGCc -3'
miRNA:   3'- -CUCgUCCCU------UCuuCCGuCA---------CCugCCG- -5'
33315 5' -56.5 NC_007605.1 + 168537 0.67 0.87117
Target:  5'- aGAGUaAGGGAAaGGGGguGUGG--GGCa -3'
miRNA:   3'- -CUCG-UCCCUUcUUCCguCACCugCCG- -5'
33315 5' -56.5 NC_007605.1 + 168232 0.68 0.823676
Target:  5'- uGAGCAGgaugaggucuaGGAAGAAGGCua-GGAagaaGGCc -3'
miRNA:   3'- -CUCGUC-----------CCUUCUUCCGucaCCUg---CCG- -5'
33315 5' -56.5 NC_007605.1 + 166796 0.66 0.878377
Target:  5'- aGAGCcGGGcAGGccgcAGGCAGaGGACuGCu -3'
miRNA:   3'- -CUCGuCCCuUCU----UCCGUCaCCUGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.