miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 5' -56.5 NC_007605.1 + 96220 0.73 0.510881
Target:  5'- gGAGCAGGaGGAG-GGGCAGgagGGGCaggaggGGCa -3'
miRNA:   3'- -CUCGUCC-CUUCuUCCGUCa--CCUG------CCG- -5'
33315 5' -56.5 NC_007605.1 + 69900 0.76 0.373792
Target:  5'- uGGGCuaacGGGAGGAAaugaacccagggguGGCAGUGGAUGGg -3'
miRNA:   3'- -CUCGu---CCCUUCUU--------------CCGUCACCUGCCg -5'
33315 5' -56.5 NC_007605.1 + 61087 0.75 0.427263
Target:  5'- cGGCcGGGAAGAagGGGCuGUGGACauaGGCc -3'
miRNA:   3'- cUCGuCCCUUCU--UCCGuCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 96594 0.75 0.445163
Target:  5'- aGGcCGGGGucGAGGAGGUAGUGGA-GGCc -3'
miRNA:   3'- cUC-GUCCC--UUCUUCCGUCACCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 150581 0.73 0.501229
Target:  5'- cGAGacCGGGGuccaugcucaGAGAacagcccucccGGGCGGUGGGCGGCc -3'
miRNA:   3'- -CUC--GUCCC----------UUCU-----------UCCGUCACCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 95893 0.73 0.510881
Target:  5'- gGAGCAGGaGGAG-GGGCAGgagGGGCaggaggGGCa -3'
miRNA:   3'- -CUCGUCC-CUUCuUCCGUCa--CCUG------CCG- -5'
33315 5' -56.5 NC_007605.1 + 95956 0.73 0.510881
Target:  5'- gGAGCAGGaGGAG-GGGCAGgagGGGCaggaggGGCa -3'
miRNA:   3'- -CUCGUCC-CUUCuUCCGUCa--CCUG------CCG- -5'
33315 5' -56.5 NC_007605.1 + 96037 0.73 0.510881
Target:  5'- gGAGCAGGaGGAG-GGGCAGgagGGGCaggaggGGCa -3'
miRNA:   3'- -CUCGUCC-CUUCuUCCGUCa--CCUG------CCG- -5'
33315 5' -56.5 NC_007605.1 + 96118 0.73 0.510881
Target:  5'- gGAGCAGGaGGAG-GGGCAGgagGGGCaggaggGGCa -3'
miRNA:   3'- -CUCGUCC-CUUCuUCCGUCa--CCUG------CCG- -5'
33315 5' -56.5 NC_007605.1 + 171298 0.77 0.336964
Target:  5'- -cGCAGGGGGugugucugguGggGGCGGgagcgggGGGCGGCg -3'
miRNA:   3'- cuCGUCCCUU----------CuuCCGUCa------CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 170760 0.77 0.336964
Target:  5'- -cGCAGGGGGugugucugguGggGGCGGgagcgggGGGCGGCg -3'
miRNA:   3'- cuCGUCCCUU----------CuuCCGUCa------CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 170238 0.77 0.336964
Target:  5'- -cGCAGGGGGugugucugguGggGGCGGgagcgggGGGCGGCg -3'
miRNA:   3'- cuCGUCCCUU----------CuuCCGUCa------CCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 170650 0.79 0.255247
Target:  5'- cGGGCuccGGGGcuGcGGGCGGUGGAUGGCg -3'
miRNA:   3'- -CUCG---UCCCuuCuUCCGUCACCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 96532 0.79 0.263877
Target:  5'- gGAGCAGGaGGuggaggccggggucgAGGAGGCAGUGGA-GGCc -3'
miRNA:   3'- -CUCGUCC-CU---------------UCUUCCGUCACCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 37206 0.79 0.267647
Target:  5'- aGAGCAGGGGGaGGGGCAG-GGGCaggGGCa -3'
miRNA:   3'- -CUCGUCCCUUcUUCCGUCaCCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 169590 0.78 0.280529
Target:  5'- cGGGCuccgGGGGcuGcGGGCGGUGGAUGGCg -3'
miRNA:   3'- -CUCG----UCCCuuCuUCCGUCACCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 170127 0.78 0.280529
Target:  5'- cGGGCuccgGGGGcuGcGGGCGGUGGAUGGCg -3'
miRNA:   3'- -CUCG----UCCCuuCuUCCGUCACCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 171187 0.78 0.280529
Target:  5'- cGGGCuccgGGGGcuGcGGGCGGUGGAUGGCg -3'
miRNA:   3'- -CUCG----UCCCuuCuUCCGUCACCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 59982 0.77 0.314875
Target:  5'- -uGCGGGGAugaAGAcAGGUGGUGGGCGGg -3'
miRNA:   3'- cuCGUCCCU---UCU-UCCGUCACCUGCCg -5'
33315 5' -56.5 NC_007605.1 + 169700 0.77 0.336964
Target:  5'- -cGCAGGGGGugugucugguGggGGCGGgagcgggGGGCGGCg -3'
miRNA:   3'- cuCGUCCCUU----------CuuCCGUCa------CCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.