miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 5' -56.5 NC_007605.1 + 61397 1.12 0.001611
Target:  5'- cGAGCAGGGAAGAAGGCAGUGGACGGCa -3'
miRNA:   3'- -CUCGUCCCUUCUUCCGUCACCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 136450 0.75 0.418475
Target:  5'- uGGCuGGGucuguGGAGGcCGGUGGugGGCu -3'
miRNA:   3'- cUCGuCCCuu---CUUCC-GUCACCugCCG- -5'
33315 5' -56.5 NC_007605.1 + 62305 0.75 0.418475
Target:  5'- cGGCGGGGGAGAGGGUgaagaaagcGGUGG-UGGUc -3'
miRNA:   3'- cUCGUCCCUUCUUCCG---------UCACCuGCCG- -5'
33315 5' -56.5 NC_007605.1 + 68752 0.66 0.911065
Target:  5'- aAGUAGGGGuccuAGGAGGUGGcGGA-GGUg -3'
miRNA:   3'- cUCGUCCCU----UCUUCCGUCaCCUgCCG- -5'
33315 5' -56.5 NC_007605.1 + 23253 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 20184 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 14047 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 36633 0.76 0.368137
Target:  5'- gGGGCGGGGGuggugguGAAGGUGGUGGAggUGGUg -3'
miRNA:   3'- -CUCGUCCCUu------CUUCCGUCACCU--GCCG- -5'
33315 5' -56.5 NC_007605.1 + 27616 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 12271 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 21478 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 30685 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 32460 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 18409 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 29391 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 33754 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 15340 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 125583 0.75 0.418475
Target:  5'- uGGGCAccGGGAGGuGGGCAGcguggucagGGugGGCa -3'
miRNA:   3'- -CUCGU--CCCUUCuUCCGUCa--------CCugCCG- -5'
33315 5' -56.5 NC_007605.1 + 26322 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 17116 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.