miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33315 5' -56.5 NC_007605.1 + 34894 0.73 0.500268
Target:  5'- gGAGCAGGGGgacagagAGAAGGgcCGGUGGGgGGa -3'
miRNA:   3'- -CUCGUCCCU-------UCUUCC--GUCACCUgCCg -5'
33315 5' -56.5 NC_007605.1 + 62305 0.75 0.418475
Target:  5'- cGGCGGGGGAGAGGGUgaagaaagcGGUGG-UGGUc -3'
miRNA:   3'- cUCGUCCCUUCUUCCG---------UCACCuGCCG- -5'
33315 5' -56.5 NC_007605.1 + 30685 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 26322 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 115417 0.72 0.577265
Target:  5'- cGGUGGGGAAGgcGGCGGaGGccgagcagggacugGCGGCa -3'
miRNA:   3'- cUCGUCCCUUCuuCCGUCaCC--------------UGCCG- -5'
33315 5' -56.5 NC_007605.1 + 19549 0.73 0.500268
Target:  5'- gGAGCAGGGGgacagagAGAAGGgcCGGUGGGgGGa -3'
miRNA:   3'- -CUCGUCCCU-------UCUUCC--GUCACCUgCCg -5'
33315 5' -56.5 NC_007605.1 + 136450 0.75 0.418475
Target:  5'- uGGCuGGGucuguGGAGGcCGGUGGugGGCu -3'
miRNA:   3'- cUCGuCCCuu---CUUCC-GUCACCugCCG- -5'
33315 5' -56.5 NC_007605.1 + 29391 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 22618 0.73 0.500268
Target:  5'- gGAGCAGGGGgacagagAGAAGGgcCGGUGGGgGGa -3'
miRNA:   3'- -CUCGUCCCU-------UCUUCC--GUCACCUgCCg -5'
33315 5' -56.5 NC_007605.1 + 32460 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 125583 0.75 0.418475
Target:  5'- uGGGCAccGGGAGGuGGGCAGcguggucagGGugGGCa -3'
miRNA:   3'- -CUCGU--CCCUUCuUCCGUCa--------CCugCCG- -5'
33315 5' -56.5 NC_007605.1 + 31825 0.73 0.500268
Target:  5'- gGAGCAGGGGgacagagAGAAGGgcCGGUGGGgGGa -3'
miRNA:   3'- -CUCGUCCCU-------UCUUCC--GUCACCUgCCg -5'
33315 5' -56.5 NC_007605.1 + 18409 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 27616 0.75 0.409797
Target:  5'- cGGGgAGGGggGGAGGCuG-GGGUGGCa -3'
miRNA:   3'- -CUCgUCCCuuCUUCCGuCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 14047 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 23253 0.82 0.17675
Target:  5'- gGGGCuucuGGGggGAccgGGGCAGUGGACaggGGCg -3'
miRNA:   3'- -CUCGu---CCCuuCU---UCCGUCACCUG---CCG- -5'
33315 5' -56.5 NC_007605.1 + 35305 0.71 0.631084
Target:  5'- uGGGguGGacacAGGggGGCGG-GGAUGGCc -3'
miRNA:   3'- -CUCguCCc---UUCuuCCGUCaCCUGCCG- -5'
33315 5' -56.5 NC_007605.1 + 89823 0.72 0.580292
Target:  5'- aGGGUaAGaGGAGGAGGGCGgGUGGcagccGCGGCc -3'
miRNA:   3'- -CUCG-UC-CCUUCUUCCGU-CACC-----UGCCG- -5'
33315 5' -56.5 NC_007605.1 + 76414 0.73 0.547217
Target:  5'- uGGCGGcGAGGAAGaGCAGUGGcacagccuuugcaaACGGCu -3'
miRNA:   3'- cUCGUCcCUUCUUC-CGUCACC--------------UGCCG- -5'
33315 5' -56.5 NC_007605.1 + 16480 0.73 0.500268
Target:  5'- gGAGCAGGGGgacagagAGAAGGgcCGGUGGGgGGa -3'
miRNA:   3'- -CUCGUCCCU-------UCUUCC--GUCACCUgCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.