miRNA display CGI


Results 1 - 20 of 159 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33316 3' -55.2 NC_007605.1 + 68484 0.66 0.949882
Target:  5'- aAUGCgGCaGAGGCUAAgCGCcGCCgCCa -3'
miRNA:   3'- aUAUG-CGcCUCUGGUUgGCGaUGG-GG- -5'
33316 3' -55.2 NC_007605.1 + 54522 0.66 0.949882
Target:  5'- aGUACgaGCGGGGGCUGGCCGg-GCUUCu -3'
miRNA:   3'- aUAUG--CGCCUCUGGUUGGCgaUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 169763 0.66 0.949882
Target:  5'- ---cCGCGGAccccGACCccCCGCcGCCCg -3'
miRNA:   3'- auauGCGCCU----CUGGuuGGCGaUGGGg -5'
33316 3' -55.2 NC_007605.1 + 171360 0.66 0.949882
Target:  5'- ---cCGCGGAccccGACCccCCGCcGCCCg -3'
miRNA:   3'- auauGCGCCU----CUGGuuGGCGaUGGGg -5'
33316 3' -55.2 NC_007605.1 + 40917 0.66 0.949882
Target:  5'- --gGgGCGGAGcCCAAUC-CUcCCCCu -3'
miRNA:   3'- auaUgCGCCUCuGGUUGGcGAuGGGG- -5'
33316 3' -55.2 NC_007605.1 + 131301 0.66 0.949882
Target:  5'- --aACGUGGAGGagaaCAugCGCcGCCUg -3'
miRNA:   3'- auaUGCGCCUCUg---GUugGCGaUGGGg -5'
33316 3' -55.2 NC_007605.1 + 170300 0.66 0.949882
Target:  5'- ---cCGCGGAccccGACCccCCGCcGCCCg -3'
miRNA:   3'- auauGCGCCU----CUGGuuGGCGaUGGGg -5'
33316 3' -55.2 NC_007605.1 + 170823 0.66 0.949882
Target:  5'- ---cCGCGGAccccGACCccCCGCcGCCCg -3'
miRNA:   3'- auauGCGCCU----CUGGuuGGCGaUGGGg -5'
33316 3' -55.2 NC_007605.1 + 50089 0.66 0.949882
Target:  5'- --gGCGCGG-GAUagCGugCGCUACCg- -3'
miRNA:   3'- auaUGCGCCuCUG--GUugGCGAUGGgg -5'
33316 3' -55.2 NC_007605.1 + 106386 0.66 0.949882
Target:  5'- gAUGgGCGG-GACCAACa---ACCCCc -3'
miRNA:   3'- aUAUgCGCCuCUGGUUGgcgaUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 40881 0.66 0.949045
Target:  5'- -cUAUGgaGGGGACCcuccugaggcuCCGcCUACCCCa -3'
miRNA:   3'- auAUGCg-CCUCUGGuu---------GGC-GAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 143697 0.66 0.949045
Target:  5'- -cUAUGgaGGGGACCcuccugaggcuCCGcCUACCCCa -3'
miRNA:   3'- auAUGCg-CCUCUGGuu---------GGC-GAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 4451 0.66 0.945604
Target:  5'- cUAUGC-CGGuGGCCu-CCGaCUACCUCc -3'
miRNA:   3'- -AUAUGcGCCuCUGGuuGGC-GAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 153880 0.66 0.945604
Target:  5'- gAUAUGUGGGGguGCUGACgGCggcaagACCCUg -3'
miRNA:   3'- aUAUGCGCCUC--UGGUUGgCGa-----UGGGG- -5'
33316 3' -55.2 NC_007605.1 + 55247 0.66 0.945604
Target:  5'- --gGCGCcuGGAGGCCGAagGCUuuaaGCCCg -3'
miRNA:   3'- auaUGCG--CCUCUGGUUggCGA----UGGGg -5'
33316 3' -55.2 NC_007605.1 + 103313 0.66 0.941093
Target:  5'- ---uUGCGGAGGCgG--UGCUGCCCg -3'
miRNA:   3'- auauGCGCCUCUGgUugGCGAUGGGg -5'
33316 3' -55.2 NC_007605.1 + 40380 0.66 0.941093
Target:  5'- --gGCGCGGGGuCCcagGACCac-GCCCCu -3'
miRNA:   3'- auaUGCGCCUCuGG---UUGGcgaUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 59061 0.66 0.941093
Target:  5'- --gAUGCGGAgGGCCGAgccuccacucCCGC--CCCCg -3'
miRNA:   3'- auaUGCGCCU-CUGGUU----------GGCGauGGGG- -5'
33316 3' -55.2 NC_007605.1 + 105108 0.66 0.941093
Target:  5'- gAUGgGUGGAGagGCC-ACCGUgGCCCg -3'
miRNA:   3'- aUAUgCGCCUC--UGGuUGGCGaUGGGg -5'
33316 3' -55.2 NC_007605.1 + 55595 0.66 0.941093
Target:  5'- aUGUACGUGGGGuuCu-UUGCgGCCCCg -3'
miRNA:   3'- -AUAUGCGCCUCugGuuGGCGaUGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.