Results 1 - 20 of 159 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 62418 | 1.1 | 0.003338 |
Target: 5'- gUAUACGCGGAGACCAACCGCUACCCCu -3' miRNA: 3'- -AUAUGCGCCUCUGGUUGGCGAUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 62190 | 0.81 | 0.25257 |
Target: 5'- gUGUACGCGGAGGCCAGCgggggacaaaCGCc-CCCCg -3' miRNA: 3'- -AUAUGCGCCUCUGGUUG----------GCGauGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 63339 | 0.81 | 0.258666 |
Target: 5'- --gACGCGGAuGGCCAACCuGCUguacgacaGCCCCg -3' miRNA: 3'- auaUGCGCCU-CUGGUUGG-CGA--------UGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 74381 | 0.77 | 0.406252 |
Target: 5'- --cGCGCGGGGGCCcugcGCuCGCUcacGCCCCu -3' miRNA: 3'- auaUGCGCCUCUGGu---UG-GCGA---UGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 62244 | 0.76 | 0.450567 |
Target: 5'- --aGCGUGGuGGCC--UCGCUGCCCCu -3' miRNA: 3'- auaUGCGCCuCUGGuuGGCGAUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 124768 | 0.76 | 0.450567 |
Target: 5'- aGUACGUGGGGGCUgucaaGACCGUgGCCUCg -3' miRNA: 3'- aUAUGCGCCUCUGG-----UUGGCGaUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 162574 | 0.75 | 0.49741 |
Target: 5'- gUGUA-GCGGGGcucgucguCCGGCCGCUGCCCg -3' miRNA: 3'- -AUAUgCGCCUCu-------GGUUGGCGAUGGGg -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 39967 | 0.75 | 0.516755 |
Target: 5'- gGUGCaGUGGAGcGCCAggaACCccgGCUGCCCCa -3' miRNA: 3'- aUAUG-CGCCUC-UGGU---UGG---CGAUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 6347 | 0.74 | 0.566318 |
Target: 5'- aGUGCG-GGGGAUaugGCCaGCUGCCCCg -3' miRNA: 3'- aUAUGCgCCUCUGgu-UGG-CGAUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 129672 | 0.73 | 0.595635 |
Target: 5'- aGUACGCGcuGAGGuuAGCCaccgucgGCUACCCCa -3' miRNA: 3'- aUAUGCGC--CUCUggUUGG-------CGAUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 157582 | 0.73 | 0.596651 |
Target: 5'- --gAUGCGGGGaacGCCAccacACCGgUGCCCCc -3' miRNA: 3'- auaUGCGCCUC---UGGU----UGGCgAUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 58062 | 0.73 | 0.606823 |
Target: 5'- ---cCGCGGAGGCCGggGCCGCggagGCCg- -3' miRNA: 3'- auauGCGCCUCUGGU--UGGCGa---UGGgg -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 58092 | 0.73 | 0.606823 |
Target: 5'- ---cCGCGGAGGCCGggGCCGCggagGCCg- -3' miRNA: 3'- auauGCGCCUCUGGU--UGGCGa---UGGgg -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 61174 | 0.73 | 0.627216 |
Target: 5'- cUGUcCGCGGGGccGCCGccACCGCUGCCguCCa -3' miRNA: 3'- -AUAuGCGCCUC--UGGU--UGGCGAUGG--GG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 25042 | 0.73 | 0.637422 |
Target: 5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3' miRNA: 3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 12767 | 0.73 | 0.637422 |
Target: 5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3' miRNA: 3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 15836 | 0.73 | 0.637422 |
Target: 5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3' miRNA: 3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 34249 | 0.73 | 0.637422 |
Target: 5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3' miRNA: 3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 31180 | 0.73 | 0.637422 |
Target: 5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3' miRNA: 3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5' |
|||||||
33316 | 3' | -55.2 | NC_007605.1 | + | 28111 | 0.73 | 0.637422 |
Target: 5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3' miRNA: 3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home