miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33316 3' -55.2 NC_007605.1 + 2559 0.73 0.647624
Target:  5'- cAUGcCGCGGGGACCAuccagGCCaaCUGCCCa -3'
miRNA:   3'- aUAU-GCGCCUCUGGU-----UGGc-GAUGGGg -5'
33316 3' -55.2 NC_007605.1 + 4451 0.66 0.945604
Target:  5'- cUAUGC-CGGuGGCCu-CCGaCUACCUCc -3'
miRNA:   3'- -AUAUGcGCCuCUGGuuGGC-GAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 6347 0.74 0.566318
Target:  5'- aGUGCG-GGGGAUaugGCCaGCUGCCCCg -3'
miRNA:   3'- aUAUGCgCCUCUGgu-UGG-CGAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 8294 0.67 0.896497
Target:  5'- ---gUGUGGGGGCUGACgCGUgcCCCCa -3'
miRNA:   3'- auauGCGCCUCUGGUUG-GCGauGGGG- -5'
33316 3' -55.2 NC_007605.1 + 12590 0.67 0.909061
Target:  5'- --gGCGCcuccucGGGGCCAGCUGCcgggggGCCCUg -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCGa-----UGGGG- -5'
33316 3' -55.2 NC_007605.1 + 12767 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 15659 0.67 0.909061
Target:  5'- --gGCGCcuccucGGGGCCAGCUGCcgggggGCCCUg -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCGa-----UGGGG- -5'
33316 3' -55.2 NC_007605.1 + 15836 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 18728 0.67 0.909061
Target:  5'- --gGCGCcuccucGGGGCCAGCUGCcgggggGCCCUg -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCGa-----UGGGG- -5'
33316 3' -55.2 NC_007605.1 + 18905 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 21797 0.67 0.909061
Target:  5'- --gGCGCcuccucGGGGCCAGCUGCcgggggGCCCUg -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCGa-----UGGGG- -5'
33316 3' -55.2 NC_007605.1 + 21973 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 24866 0.67 0.909061
Target:  5'- --gGCGCcuccucGGGGCCAGCUGCcgggggGCCCUg -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCGa-----UGGGG- -5'
33316 3' -55.2 NC_007605.1 + 25042 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 27935 0.67 0.909061
Target:  5'- --gGCGCcuccucGGGGCCAGCUGCcgggggGCCCUg -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCGa-----UGGGG- -5'
33316 3' -55.2 NC_007605.1 + 28111 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 31004 0.67 0.909061
Target:  5'- --gGCGCcuccucGGGGCCAGCUGCcgggggGCCCUg -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCGa-----UGGGG- -5'
33316 3' -55.2 NC_007605.1 + 31180 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 34073 0.67 0.909061
Target:  5'- --gGCGCcuccucGGGGCCAGCUGCcgggggGCCCUg -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCGa-----UGGGG- -5'
33316 3' -55.2 NC_007605.1 + 34106 0.66 0.936348
Target:  5'- --gGCuCGGcAGcCCAGCCGaccgGCCCCa -3'
miRNA:   3'- auaUGcGCC-UCuGGUUGGCga--UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.