miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33316 3' -55.2 NC_007605.1 + 39173 0.73 0.646604
Target:  5'- --cGgGCGGccGCCGguggguccgcuggGCCGCUGCCCCg -3'
miRNA:   3'- auaUgCGCCucUGGU-------------UGGCGAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 34249 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 38299 0.73 0.646604
Target:  5'- --cGgGCGGccGCCGguggguccgcuggGCCGCUGCCCCg -3'
miRNA:   3'- auaUgCGCCucUGGU-------------UGGCGAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 38424 0.73 0.646604
Target:  5'- --cGgGCGGccGCCGguggguccgcuggGCCGCUGCCCCg -3'
miRNA:   3'- auaUgCGCCucUGGU-------------UGGCGAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 38549 0.73 0.646604
Target:  5'- --cGgGCGGccGCCGguggguccgcuggGCCGCUGCCCCg -3'
miRNA:   3'- auaUgCGCCucUGGU-------------UGGCGAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 38674 0.73 0.646604
Target:  5'- --cGgGCGGccGCCGguggguccgcuggGCCGCUGCCCCg -3'
miRNA:   3'- auaUgCGCCucUGGU-------------UGGCGAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 38799 0.73 0.646604
Target:  5'- --cGgGCGGccGCCGguggguccgcuggGCCGCUGCCCCg -3'
miRNA:   3'- auaUgCGCCucUGGU-------------UGGCGAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 38923 0.73 0.646604
Target:  5'- --cGgGCGGccGCCGguggguccgcuggGCCGCUGCCCCg -3'
miRNA:   3'- auaUgCGCCucUGGU-------------UGGCGAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 39048 0.73 0.646604
Target:  5'- --cGgGCGGccGCCGguggguccgcuggGCCGCUGCCCCg -3'
miRNA:   3'- auaUgCGCCucUGGU-------------UGGCGAUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 31180 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 28111 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 25042 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 162574 0.75 0.49741
Target:  5'- gUGUA-GCGGGGcucgucguCCGGCCGCUGCCCg -3'
miRNA:   3'- -AUAUgCGCCUCu-------GGUUGGCGAUGGGg -5'
33316 3' -55.2 NC_007605.1 + 58062 0.73 0.606823
Target:  5'- ---cCGCGGAGGCCGggGCCGCggagGCCg- -3'
miRNA:   3'- auauGCGCCUCUGGU--UGGCGa---UGGgg -5'
33316 3' -55.2 NC_007605.1 + 58092 0.73 0.606823
Target:  5'- ---cCGCGGAGGCCGggGCCGCggagGCCg- -3'
miRNA:   3'- auauGCGCCUCUGGU--UGGCGa---UGGgg -5'
33316 3' -55.2 NC_007605.1 + 61174 0.73 0.627216
Target:  5'- cUGUcCGCGGGGccGCCGccACCGCUGCCguCCa -3'
miRNA:   3'- -AUAuGCGCCUC--UGGU--UGGCGAUGG--GG- -5'
33316 3' -55.2 NC_007605.1 + 12767 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 15836 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 18905 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5'
33316 3' -55.2 NC_007605.1 + 21973 0.73 0.637422
Target:  5'- --gGCGCcuccucGGGGCCAGCCGCcgggguugguucUGCCCCu -3'
miRNA:   3'- auaUGCGc-----CUCUGGUUGGCG------------AUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.