miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33316 5' -63.3 NC_007605.1 + 144398 0.66 0.640968
Target:  5'- uGUGGuGGCAGaGcUUGGCCCugGGCC-Ca -3'
miRNA:   3'- -CGUC-CCGUC-CcAGUCGGGugCCGGcG- -5'
33316 5' -63.3 NC_007605.1 + 34713 0.66 0.640968
Target:  5'- -aGGGGCgAGGaacCGGCCUcuGgGGCCGCc -3'
miRNA:   3'- cgUCCCG-UCCca-GUCGGG--UgCCGGCG- -5'
33316 5' -63.3 NC_007605.1 + 13230 0.66 0.640968
Target:  5'- -aGGGGCgAGGaacCGGCCUcuGgGGCCGCc -3'
miRNA:   3'- cgUCCCG-UCCca-GUCGGG--UgCCGGCG- -5'
33316 5' -63.3 NC_007605.1 + 22437 0.66 0.640968
Target:  5'- -aGGGGCgAGGaacCGGCCUcuGgGGCCGCc -3'
miRNA:   3'- cgUCCCG-UCCca-GUCGGG--UgCCGGCG- -5'
33316 5' -63.3 NC_007605.1 + 19368 0.66 0.640968
Target:  5'- -aGGGGCgAGGaacCGGCCUcuGgGGCCGCc -3'
miRNA:   3'- cgUCCCG-UCCca-GUCGGG--UgCCGGCG- -5'
33316 5' -63.3 NC_007605.1 + 25506 0.66 0.640968
Target:  5'- -aGGGGCgAGGaacCGGCCUcuGgGGCCGCc -3'
miRNA:   3'- cgUCCCG-UCCca-GUCGGG--UgCCGGCG- -5'
33316 5' -63.3 NC_007605.1 + 31644 0.66 0.640968
Target:  5'- -aGGGGCgAGGaacCGGCCUcuGgGGCCGCc -3'
miRNA:   3'- cgUCCCG-UCCca-GUCGGG--UgCCGGCG- -5'
33316 5' -63.3 NC_007605.1 + 16299 0.66 0.640968
Target:  5'- -aGGGGCgAGGaacCGGCCUcuGgGGCCGCc -3'
miRNA:   3'- cgUCCCG-UCCca-GUCGGG--UgCCGGCG- -5'
33316 5' -63.3 NC_007605.1 + 28575 0.66 0.640968
Target:  5'- -aGGGGCgAGGaacCGGCCUcuGgGGCCGCc -3'
miRNA:   3'- cgUCCCG-UCCca-GUCGGG--UgCCGGCG- -5'
33316 5' -63.3 NC_007605.1 + 132639 0.66 0.640968
Target:  5'- -gAGGGCAcacagaccccGGGUgGGaUCCAUGGCUGg -3'
miRNA:   3'- cgUCCCGU----------CCCAgUC-GGGUGCCGGCg -5'
33316 5' -63.3 NC_007605.1 + 29155 0.66 0.631287
Target:  5'- aGgGGGGCGGGGaUGGCCCG-GGUgGa -3'
miRNA:   3'- -CgUCCCGUCCCaGUCGGGUgCCGgCg -5'
33316 5' -63.3 NC_007605.1 + 13811 0.66 0.631287
Target:  5'- aGgGGGGCGGGGaUGGCCCG-GGUgGa -3'
miRNA:   3'- -CgUCCCGUCCCaGUCGGGUgCCGgCg -5'
33316 5' -63.3 NC_007605.1 + 16880 0.66 0.631287
Target:  5'- aGgGGGGCGGGGaUGGCCCG-GGUgGa -3'
miRNA:   3'- -CgUCCCGUCCCaGUCGGGUgCCGgCg -5'
33316 5' -63.3 NC_007605.1 + 19949 0.66 0.631287
Target:  5'- aGgGGGGCGGGGaUGGCCCG-GGUgGa -3'
miRNA:   3'- -CgUCCCGUCCCaGUCGGGUgCCGgCg -5'
33316 5' -63.3 NC_007605.1 + 32224 0.66 0.631287
Target:  5'- aGgGGGGCGGGGaUGGCCCG-GGUgGa -3'
miRNA:   3'- -CgUCCCGUCCCaGUCGGGUgCCGgCg -5'
33316 5' -63.3 NC_007605.1 + 23018 0.66 0.631287
Target:  5'- aGgGGGGCGGGGaUGGCCCG-GGUgGa -3'
miRNA:   3'- -CgUCCCGUCCCaGUCGGGUgCCGgCg -5'
33316 5' -63.3 NC_007605.1 + 62516 0.66 0.631287
Target:  5'- -gGGGGCAGugaGGaugccagCAcGUCCAgGGCCGCc -3'
miRNA:   3'- cgUCCCGUC---CCa------GU-CGGGUgCCGGCG- -5'
33316 5' -63.3 NC_007605.1 + 26087 0.66 0.631287
Target:  5'- aGgGGGGCGGGGaUGGCCCG-GGUgGa -3'
miRNA:   3'- -CgUCCCGUCCCaGUCGGGUgCCGgCg -5'
33316 5' -63.3 NC_007605.1 + 35293 0.66 0.631287
Target:  5'- aGgGGGGCGGGGaUGGCCCG-GGUgGa -3'
miRNA:   3'- -CgUCCCGUCCCaGUCGGGUgCCGgCg -5'
33316 5' -63.3 NC_007605.1 + 59261 0.66 0.628383
Target:  5'- gGCGGGaGUGGaGGcUCGGCCCuccgcauccuaggcACGGCCu- -3'
miRNA:   3'- -CGUCC-CGUC-CC-AGUCGGG--------------UGCCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.