miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33317 3' -61 NC_007605.1 + 74455 0.66 0.74386
Target:  5'- aGGAUGGCCuCCGCAaugUCAGUguuuGAGGc -3'
miRNA:   3'- gUCUGCCGGcGGCGUg--AGUCG----CUCCu -5'
33317 3' -61 NC_007605.1 + 151104 0.66 0.734489
Target:  5'- uGGGCGGCCGCaGCcugcccCUCGGCGGc-- -3'
miRNA:   3'- gUCUGCCGGCGgCGu-----GAGUCGCUccu -5'
33317 3' -61 NC_007605.1 + 8414 0.66 0.734489
Target:  5'- cCAGugGaGuCCGCUGCugUCGGCGu--- -3'
miRNA:   3'- -GUCugC-C-GGCGGCGugAGUCGCuccu -5'
33317 3' -61 NC_007605.1 + 158589 0.66 0.734489
Target:  5'- -uGGCGGUagGCUGCACcguggUGGCGGGGGg -3'
miRNA:   3'- guCUGCCGg-CGGCGUGa----GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 98788 0.66 0.734489
Target:  5'- gGGAcCGG-CGCCuCugUCGGaCGAGGAg -3'
miRNA:   3'- gUCU-GCCgGCGGcGugAGUC-GCUCCU- -5'
33317 3' -61 NC_007605.1 + 66954 0.66 0.715511
Target:  5'- -uGGCGGCCGCCGuCACcCuGCc-GGAg -3'
miRNA:   3'- guCUGCCGGCGGC-GUGaGuCGcuCCU- -5'
33317 3' -61 NC_007605.1 + 154094 0.66 0.715511
Target:  5'- -uGAUGGCCaGCUGCuGCUUGuCGAGGAu -3'
miRNA:   3'- guCUGCCGG-CGGCG-UGAGUcGCUCCU- -5'
33317 3' -61 NC_007605.1 + 61987 0.66 0.705919
Target:  5'- gAGGCccuGGCCGCuCGUguGCaggaggCGGCGGGGAg -3'
miRNA:   3'- gUCUG---CCGGCG-GCG--UGa-----GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 136319 0.66 0.705919
Target:  5'- gCGGAgguuCGGCCGCCGCG---GGCcAGGAc -3'
miRNA:   3'- -GUCU----GCCGGCGGCGUgagUCGcUCCU- -5'
33317 3' -61 NC_007605.1 + 151930 0.66 0.705919
Target:  5'- uGGACGGCCGUgUGCAUgccuUUGGUGGGGc -3'
miRNA:   3'- gUCUGCCGGCG-GCGUG----AGUCGCUCCu -5'
33317 3' -61 NC_007605.1 + 57591 0.67 0.657255
Target:  5'- gGGGCuGCUGCUGCAgUCGGgGaAGGGg -3'
miRNA:   3'- gUCUGcCGGCGGCGUgAGUCgC-UCCU- -5'
33317 3' -61 NC_007605.1 + 74091 0.67 0.651365
Target:  5'- uCAGAgccUGGCCGCCGUcacgucccuggccgaGCUgGGgGAGGu -3'
miRNA:   3'- -GUCU---GCCGGCGGCG---------------UGAgUCgCUCCu -5'
33317 3' -61 NC_007605.1 + 4289 0.67 0.647436
Target:  5'- gAGGCGGacgaGCCGguCUCGGgGcAGGAg -3'
miRNA:   3'- gUCUGCCgg--CGGCguGAGUCgC-UCCU- -5'
33317 3' -61 NC_007605.1 + 112739 0.67 0.637605
Target:  5'- uCAGACGGCCG-CGCu----GCGAGGc -3'
miRNA:   3'- -GUCUGCCGGCgGCGugaguCGCUCCu -5'
33317 3' -61 NC_007605.1 + 85565 0.68 0.617939
Target:  5'- --aACGGCCaugGCCGC-CUCAGCGGuGAc -3'
miRNA:   3'- gucUGCCGG---CGGCGuGAGUCGCUcCU- -5'
33317 3' -61 NC_007605.1 + 68369 0.68 0.617939
Target:  5'- uGGcCGGCCuGCUG-ACgUCAGCGGGGGa -3'
miRNA:   3'- gUCuGCCGG-CGGCgUG-AGUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 74297 0.68 0.617939
Target:  5'- uCAGAaccaGGCCGCaGCgGCUCuGUGAGGu -3'
miRNA:   3'- -GUCUg---CCGGCGgCG-UGAGuCGCUCCu -5'
33317 3' -61 NC_007605.1 + 117387 0.68 0.608118
Target:  5'- aCAGuGCGGCUcagGCUaCccugGCUCAGCGAGGAg -3'
miRNA:   3'- -GUC-UGCCGG---CGGcG----UGAGUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 38922 0.68 0.585602
Target:  5'- gCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 49469 0.68 0.578779
Target:  5'- gCAGGCucaGGCCGCCGCA-UCcGCuGGGAc -3'
miRNA:   3'- -GUCUG---CCGGCGGCGUgAGuCGcUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.