Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 33317 | 3' | -61 | NC_007605.1 | + | 75559 | 0.71 | 0.430903 |
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Target: 5'- aGGugGGCCaGCUGCAC-CuuCGAGGAg -3' miRNA: 3'- gUCugCCGG-CGGCGUGaGucGCUCCU- -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 103281 | 0.72 | 0.373432 |
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Target: 5'- aCAGacGCGGCUucuGCCGCaACUgCGGCGGGGGc -3' miRNA: 3'- -GUC--UGCCGG---CGGCG-UGA-GUCGCUCCU- -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 156350 | 0.72 | 0.373432 |
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Target: 5'- gAGACcGCCGCCGCACUgcuUGGgGAGGc -3' miRNA: 3'- gUCUGcCGGCGGCGUGA---GUCgCUCCu -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 52878 | 0.72 | 0.357995 |
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Target: 5'- -cGGCGGCgGCgGCGCUgGGCGGGcGGa -3' miRNA: 3'- guCUGCCGgCGgCGUGAgUCGCUC-CU- -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 130745 | 0.73 | 0.314416 |
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Target: 5'- -uGGgGGCUGCCaGC-CUCAGCGAGGu -3' miRNA: 3'- guCUgCCGGCGG-CGuGAGUCGCUCCu -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 135585 | 0.75 | 0.262731 |
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Target: 5'- aAGAacUGGCCGCUuuGCGCUCugcGCGAGGAc -3' miRNA: 3'- gUCU--GCCGGCGG--CGUGAGu--CGCUCCU- -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 54166 | 0.77 | 0.184628 |
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Target: 5'- gAGAUGGCgGCaaGCACUCGGCGGGGc -3' miRNA: 3'- gUCUGCCGgCGg-CGUGAGUCGCUCCu -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 162985 | 0.78 | 0.1717 |
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Target: 5'- gGGGCGGCCGCCaGUcccaugugcucGCUCuGCGAGGGc -3' miRNA: 3'- gUCUGCCGGCGG-CG-----------UGAGuCGCUCCU- -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 63231 | 1.08 | 0.001339 |
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Target: 5'- cCAGACGGCCGCCGCACUCAGCGAGGAg -3' miRNA: 3'- -GUCUGCCGGCGGCGUGAGUCGCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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