Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33317 | 3' | -61 | NC_007605.1 | + | 38298 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 38423 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 38548 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 38798 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 39047 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 39547 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 39422 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 39297 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 39672 | 0.68 | 0.57586 |
Target: 5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 49469 | 0.68 | 0.578779 |
Target: 5'- gCAGGCucaGGCCGCCGCA-UCcGCuGGGAc -3' miRNA: 3'- -GUCUG---CCGGCGGCGUgAGuCGcUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 38922 | 0.68 | 0.585602 |
Target: 5'- gCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3' miRNA: 3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 117387 | 0.68 | 0.608118 |
Target: 5'- aCAGuGCGGCUcagGCUaCccugGCUCAGCGAGGAg -3' miRNA: 3'- -GUC-UGCCGG---CGGcG----UGAGUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 85565 | 0.68 | 0.617939 |
Target: 5'- --aACGGCCaugGCCGC-CUCAGCGGuGAc -3' miRNA: 3'- gucUGCCGG---CGGCGuGAGUCGCUcCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 74297 | 0.68 | 0.617939 |
Target: 5'- uCAGAaccaGGCCGCaGCgGCUCuGUGAGGu -3' miRNA: 3'- -GUCUg---CCGGCGgCG-UGAGuCGCUCCu -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 68369 | 0.68 | 0.617939 |
Target: 5'- uGGcCGGCCuGCUG-ACgUCAGCGGGGGa -3' miRNA: 3'- gUCuGCCGG-CGGCgUG-AGUCGCUCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 112739 | 0.67 | 0.637605 |
Target: 5'- uCAGACGGCCG-CGCu----GCGAGGc -3' miRNA: 3'- -GUCUGCCGGCgGCGugaguCGCUCCu -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 4289 | 0.67 | 0.647436 |
Target: 5'- gAGGCGGacgaGCCGguCUCGGgGcAGGAg -3' miRNA: 3'- gUCUGCCgg--CGGCguGAGUCgC-UCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 74091 | 0.67 | 0.651365 |
Target: 5'- uCAGAgccUGGCCGCCGUcacgucccuggccgaGCUgGGgGAGGu -3' miRNA: 3'- -GUCU---GCCGGCGGCG---------------UGAgUCgCUCCu -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 57591 | 0.67 | 0.657255 |
Target: 5'- gGGGCuGCUGCUGCAgUCGGgGaAGGGg -3' miRNA: 3'- gUCUGcCGGCGGCGUgAGUCgC-UCCU- -5' |
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33317 | 3' | -61 | NC_007605.1 | + | 136319 | 0.66 | 0.705919 |
Target: 5'- gCGGAgguuCGGCCGCCGCG---GGCcAGGAc -3' miRNA: 3'- -GUCU----GCCGGCGGCGUgagUCGcUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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