Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 33317 | 3' | -61 | NC_007605.1 | + | 61987 | 0.66 | 0.705919 |
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Target: 5'- gAGGCccuGGCCGCuCGUguGCaggaggCGGCGGGGAg -3' miRNA: 3'- gUCUG---CCGGCG-GCG--UGa-----GUCGCUCCU- -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 151930 | 0.66 | 0.705919 |
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Target: 5'- uGGACGGCCGUgUGCAUgccuUUGGUGGGGc -3' miRNA: 3'- gUCUGCCGGCG-GCGUG----AGUCGCUCCu -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 66954 | 0.66 | 0.715511 |
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Target: 5'- -uGGCGGCCGCCGuCACcCuGCc-GGAg -3' miRNA: 3'- guCUGCCGGCGGC-GUGaGuCGcuCCU- -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 154094 | 0.66 | 0.715511 |
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Target: 5'- -uGAUGGCCaGCUGCuGCUUGuCGAGGAu -3' miRNA: 3'- guCUGCCGG-CGGCG-UGAGUcGCUCCU- -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 8414 | 0.66 | 0.734489 |
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Target: 5'- cCAGugGaGuCCGCUGCugUCGGCGu--- -3' miRNA: 3'- -GUCugC-C-GGCGGCGugAGUCGCuccu -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 98788 | 0.66 | 0.734489 |
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Target: 5'- gGGAcCGG-CGCCuCugUCGGaCGAGGAg -3' miRNA: 3'- gUCU-GCCgGCGGcGugAGUC-GCUCCU- -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 151104 | 0.66 | 0.734489 |
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Target: 5'- uGGGCGGCCGCaGCcugcccCUCGGCGGc-- -3' miRNA: 3'- gUCUGCCGGCGgCGu-----GAGUCGCUccu -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 158589 | 0.66 | 0.734489 |
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Target: 5'- -uGGCGGUagGCUGCACcguggUGGCGGGGGg -3' miRNA: 3'- guCUGCCGg-CGGCGUGa----GUCGCUCCU- -5' |
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| 33317 | 3' | -61 | NC_007605.1 | + | 74455 | 0.66 | 0.74386 |
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Target: 5'- aGGAUGGCCuCCGCAaugUCAGUguuuGAGGc -3' miRNA: 3'- gUCUGCCGGcGGCGUg--AGUCG----CUCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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