miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33317 3' -61 NC_007605.1 + 4289 0.67 0.647436
Target:  5'- gAGGCGGacgaGCCGguCUCGGgGcAGGAg -3'
miRNA:   3'- gUCUGCCgg--CGGCguGAGUCgC-UCCU- -5'
33317 3' -61 NC_007605.1 + 4414 0.7 0.484067
Target:  5'- gAGAUGGCCcugGCCGgGC--AGCGGGGAg -3'
miRNA:   3'- gUCUGCCGG---CGGCgUGagUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 8414 0.66 0.734489
Target:  5'- cCAGugGaGuCCGCUGCugUCGGCGu--- -3'
miRNA:   3'- -GUCugC-C-GGCGGCGugAGUCGCuccu -5'
33317 3' -61 NC_007605.1 + 38298 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 38423 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 38548 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 38673 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 38798 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 38922 0.68 0.585602
Target:  5'- gCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 39047 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 39172 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 39297 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 39422 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 39547 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 39672 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 49469 0.68 0.578779
Target:  5'- gCAGGCucaGGCCGCCGCA-UCcGCuGGGAc -3'
miRNA:   3'- -GUCUG---CCGGCGGCGUgAGuCGcUCCU- -5'
33317 3' -61 NC_007605.1 + 52878 0.72 0.357995
Target:  5'- -cGGCGGCgGCgGCGCUgGGCGGGcGGa -3'
miRNA:   3'- guCUGCCGgCGgCGUGAgUCGCUC-CU- -5'
33317 3' -61 NC_007605.1 + 54166 0.77 0.184628
Target:  5'- gAGAUGGCgGCaaGCACUCGGCGGGGc -3'
miRNA:   3'- gUCUGCCGgCGg-CGUGAGUCGCUCCu -5'
33317 3' -61 NC_007605.1 + 57591 0.67 0.657255
Target:  5'- gGGGCuGCUGCUGCAgUCGGgGaAGGGg -3'
miRNA:   3'- gUCUGcCGGCGGCGUgAGUCgC-UCCU- -5'
33317 3' -61 NC_007605.1 + 61987 0.66 0.705919
Target:  5'- gAGGCccuGGCCGCuCGUguGCaggaggCGGCGGGGAg -3'
miRNA:   3'- gUCUG---CCGGCG-GCG--UGa-----GUCGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.