miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33317 3' -61 NC_007605.1 + 62618 0.7 0.4997
Target:  5'- -uGGCGGCCGCguaccggCGCAUcaucgaagagggCAGCGGGGAg -3'
miRNA:   3'- guCUGCCGGCG-------GCGUGa-----------GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 63231 1.08 0.001339
Target:  5'- cCAGACGGCCGCCGCACUCAGCGAGGAg -3'
miRNA:   3'- -GUCUGCCGGCGGCGUGAGUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 66954 0.66 0.715511
Target:  5'- -uGGCGGCCGCCGuCACcCuGCc-GGAg -3'
miRNA:   3'- guCUGCCGGCGGC-GUGaGuCGcuCCU- -5'
33317 3' -61 NC_007605.1 + 68369 0.68 0.617939
Target:  5'- uGGcCGGCCuGCUG-ACgUCAGCGGGGGa -3'
miRNA:   3'- gUCuGCCGG-CGGCgUG-AGUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 73637 0.7 0.492315
Target:  5'- aCGGACucaugcgGGCCuggGCCGgGCUCAGUGuGGAc -3'
miRNA:   3'- -GUCUG-------CCGG---CGGCgUGAGUCGCuCCU- -5'
33317 3' -61 NC_007605.1 + 74091 0.67 0.651365
Target:  5'- uCAGAgccUGGCCGCCGUcacgucccuggccgaGCUgGGgGAGGu -3'
miRNA:   3'- -GUCU---GCCGGCGGCG---------------UGAgUCgCUCCu -5'
33317 3' -61 NC_007605.1 + 74297 0.68 0.617939
Target:  5'- uCAGAaccaGGCCGCaGCgGCUCuGUGAGGu -3'
miRNA:   3'- -GUCUg---CCGGCGgCG-UGAGuCGCUCCu -5'
33317 3' -61 NC_007605.1 + 74455 0.66 0.74386
Target:  5'- aGGAUGGCCuCCGCAaugUCAGUguuuGAGGc -3'
miRNA:   3'- gUCUGCCGGcGGCGUg--AGUCG----CUCCu -5'
33317 3' -61 NC_007605.1 + 75363 0.69 0.559385
Target:  5'- cCAGAgugcucCGGCUGCCGCAC-CAcGgGAGGc -3'
miRNA:   3'- -GUCU------GCCGGCGGCGUGaGU-CgCUCCu -5'
33317 3' -61 NC_007605.1 + 75559 0.71 0.430903
Target:  5'- aGGugGGCCaGCUGCAC-CuuCGAGGAg -3'
miRNA:   3'- gUCugCCGG-CGGCGUGaGucGCUCCU- -5'
33317 3' -61 NC_007605.1 + 85565 0.68 0.617939
Target:  5'- --aACGGCCaugGCCGC-CUCAGCGGuGAc -3'
miRNA:   3'- gucUGCCGG---CGGCGuGAGUCGCUcCU- -5'
33317 3' -61 NC_007605.1 + 98788 0.66 0.734489
Target:  5'- gGGAcCGG-CGCCuCugUCGGaCGAGGAg -3'
miRNA:   3'- gUCU-GCCgGCGGcGugAGUC-GCUCCU- -5'
33317 3' -61 NC_007605.1 + 103281 0.72 0.373432
Target:  5'- aCAGacGCGGCUucuGCCGCaACUgCGGCGGGGGc -3'
miRNA:   3'- -GUC--UGCCGG---CGGCG-UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 112739 0.67 0.637605
Target:  5'- uCAGACGGCCG-CGCu----GCGAGGc -3'
miRNA:   3'- -GUCUGCCGGCgGCGugaguCGCUCCu -5'
33317 3' -61 NC_007605.1 + 117387 0.68 0.608118
Target:  5'- aCAGuGCGGCUcagGCUaCccugGCUCAGCGAGGAg -3'
miRNA:   3'- -GUC-UGCCGG---CGGcG----UGAGUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 130745 0.73 0.314416
Target:  5'- -uGGgGGCUGCCaGC-CUCAGCGAGGu -3'
miRNA:   3'- guCUgCCGGCGG-CGuGAGUCGCUCCu -5'
33317 3' -61 NC_007605.1 + 135585 0.75 0.262731
Target:  5'- aAGAacUGGCCGCUuuGCGCUCugcGCGAGGAc -3'
miRNA:   3'- gUCU--GCCGGCGG--CGUGAGu--CGCUCCU- -5'
33317 3' -61 NC_007605.1 + 136319 0.66 0.705919
Target:  5'- gCGGAgguuCGGCCGCCGCG---GGCcAGGAc -3'
miRNA:   3'- -GUCU----GCCGGCGGCGUgagUCGcUCCU- -5'
33317 3' -61 NC_007605.1 + 140638 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 140739 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.