miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33317 3' -61 NC_007605.1 + 162985 0.78 0.1717
Target:  5'- gGGGCGGCCGCCaGUcccaugugcucGCUCuGCGAGGGc -3'
miRNA:   3'- gUCUGCCGGCGG-CG-----------UGAGuCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 158589 0.66 0.734489
Target:  5'- -uGGCGGUagGCUGCACcguggUGGCGGGGGg -3'
miRNA:   3'- guCUGCCGg-CGGCGUGa----GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 156350 0.72 0.373432
Target:  5'- gAGACcGCCGCCGCACUgcuUGGgGAGGc -3'
miRNA:   3'- gUCUGcCGGCGGCGUGA---GUCgCUCCu -5'
33317 3' -61 NC_007605.1 + 154094 0.66 0.715511
Target:  5'- -uGAUGGCCaGCUGCuGCUUGuCGAGGAu -3'
miRNA:   3'- guCUGCCGG-CGGCG-UGAGUcGCUCCU- -5'
33317 3' -61 NC_007605.1 + 151930 0.66 0.705919
Target:  5'- uGGACGGCCGUgUGCAUgccuUUGGUGGGGc -3'
miRNA:   3'- gUCUGCCGGCG-GCGUG----AGUCGCUCCu -5'
33317 3' -61 NC_007605.1 + 151104 0.66 0.734489
Target:  5'- uGGGCGGCCGCaGCcugcccCUCGGCGGc-- -3'
miRNA:   3'- gUCUGCCGGCGgCGu-----GAGUCGCUccu -5'
33317 3' -61 NC_007605.1 + 143083 0.7 0.500627
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGAu -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 142981 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 142879 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 142777 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 142676 0.69 0.560351
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcuccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG--------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 142574 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 142472 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 142370 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 142268 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 142166 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 142064 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141962 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141860 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141758 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.