miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33317 3' -61 NC_007605.1 + 141657 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141555 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141453 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141351 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141249 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141147 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 141045 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 140943 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 140841 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 140739 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 140638 0.69 0.567123
Target:  5'- gGGGCGGCCGgguggcccaccggguCCGCuggguccgcugccccGCUcCGGCGGGGGg -3'
miRNA:   3'- gUCUGCCGGC---------------GGCG---------------UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 136319 0.66 0.705919
Target:  5'- gCGGAgguuCGGCCGCCGCG---GGCcAGGAc -3'
miRNA:   3'- -GUCU----GCCGGCGGCGUgagUCGcUCCU- -5'
33317 3' -61 NC_007605.1 + 135585 0.75 0.262731
Target:  5'- aAGAacUGGCCGCUuuGCGCUCugcGCGAGGAc -3'
miRNA:   3'- gUCU--GCCGGCGG--CGUGAGu--CGCUCCU- -5'
33317 3' -61 NC_007605.1 + 130745 0.73 0.314416
Target:  5'- -uGGgGGCUGCCaGC-CUCAGCGAGGu -3'
miRNA:   3'- guCUgCCGGCGG-CGuGAGUCGCUCCu -5'
33317 3' -61 NC_007605.1 + 117387 0.68 0.608118
Target:  5'- aCAGuGCGGCUcagGCUaCccugGCUCAGCGAGGAg -3'
miRNA:   3'- -GUC-UGCCGG---CGGcG----UGAGUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 112739 0.67 0.637605
Target:  5'- uCAGACGGCCG-CGCu----GCGAGGc -3'
miRNA:   3'- -GUCUGCCGGCgGCGugaguCGCUCCu -5'
33317 3' -61 NC_007605.1 + 103281 0.72 0.373432
Target:  5'- aCAGacGCGGCUucuGCCGCaACUgCGGCGGGGGc -3'
miRNA:   3'- -GUC--UGCCGG---CGGCG-UGA-GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 98788 0.66 0.734489
Target:  5'- gGGAcCGG-CGCCuCugUCGGaCGAGGAg -3'
miRNA:   3'- gUCU-GCCgGCGGcGugAGUC-GCUCCU- -5'
33317 3' -61 NC_007605.1 + 85565 0.68 0.617939
Target:  5'- --aACGGCCaugGCCGC-CUCAGCGGuGAc -3'
miRNA:   3'- gucUGCCGG---CGGCGuGAGUCGCUcCU- -5'
33317 3' -61 NC_007605.1 + 75559 0.71 0.430903
Target:  5'- aGGugGGCCaGCUGCAC-CuuCGAGGAg -3'
miRNA:   3'- gUCugCCGG-CGGCGUGaGucGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.