miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33317 3' -61 NC_007605.1 + 75363 0.69 0.559385
Target:  5'- cCAGAgugcucCGGCUGCCGCAC-CAcGgGAGGc -3'
miRNA:   3'- -GUCU------GCCGGCGGCGUGaGU-CgCUCCu -5'
33317 3' -61 NC_007605.1 + 74455 0.66 0.74386
Target:  5'- aGGAUGGCCuCCGCAaugUCAGUguuuGAGGc -3'
miRNA:   3'- gUCUGCCGGcGGCGUg--AGUCG----CUCCu -5'
33317 3' -61 NC_007605.1 + 74297 0.68 0.617939
Target:  5'- uCAGAaccaGGCCGCaGCgGCUCuGUGAGGu -3'
miRNA:   3'- -GUCUg---CCGGCGgCG-UGAGuCGCUCCu -5'
33317 3' -61 NC_007605.1 + 74091 0.67 0.651365
Target:  5'- uCAGAgccUGGCCGCCGUcacgucccuggccgaGCUgGGgGAGGu -3'
miRNA:   3'- -GUCU---GCCGGCGGCG---------------UGAgUCgCUCCu -5'
33317 3' -61 NC_007605.1 + 73637 0.7 0.492315
Target:  5'- aCGGACucaugcgGGCCuggGCCGgGCUCAGUGuGGAc -3'
miRNA:   3'- -GUCUG-------CCGG---CGGCgUGAGUCGCuCCU- -5'
33317 3' -61 NC_007605.1 + 68369 0.68 0.617939
Target:  5'- uGGcCGGCCuGCUG-ACgUCAGCGGGGGa -3'
miRNA:   3'- gUCuGCCGG-CGGCgUG-AGUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 66954 0.66 0.715511
Target:  5'- -uGGCGGCCGCCGuCACcCuGCc-GGAg -3'
miRNA:   3'- guCUGCCGGCGGC-GUGaGuCGcuCCU- -5'
33317 3' -61 NC_007605.1 + 63231 1.08 0.001339
Target:  5'- cCAGACGGCCGCCGCACUCAGCGAGGAg -3'
miRNA:   3'- -GUCUGCCGGCGGCGUGAGUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 62618 0.7 0.4997
Target:  5'- -uGGCGGCCGCguaccggCGCAUcaucgaagagggCAGCGGGGAg -3'
miRNA:   3'- guCUGCCGGCG-------GCGUGa-----------GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 61987 0.66 0.705919
Target:  5'- gAGGCccuGGCCGCuCGUguGCaggaggCGGCGGGGAg -3'
miRNA:   3'- gUCUG---CCGGCG-GCG--UGa-----GUCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 57591 0.67 0.657255
Target:  5'- gGGGCuGCUGCUGCAgUCGGgGaAGGGg -3'
miRNA:   3'- gUCUGcCGGCGGCGUgAGUCgC-UCCU- -5'
33317 3' -61 NC_007605.1 + 54166 0.77 0.184628
Target:  5'- gAGAUGGCgGCaaGCACUCGGCGGGGc -3'
miRNA:   3'- gUCUGCCGgCGg-CGUGAGUCGCUCCu -5'
33317 3' -61 NC_007605.1 + 52878 0.72 0.357995
Target:  5'- -cGGCGGCgGCgGCGCUgGGCGGGcGGa -3'
miRNA:   3'- guCUGCCGgCGgCGUGAgUCGCUC-CU- -5'
33317 3' -61 NC_007605.1 + 49469 0.68 0.578779
Target:  5'- gCAGGCucaGGCCGCCGCA-UCcGCuGGGAc -3'
miRNA:   3'- -GUCUG---CCGGCGGCGUgAGuCGcUCCU- -5'
33317 3' -61 NC_007605.1 + 39672 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 39547 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 39422 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 39297 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 39172 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5'
33317 3' -61 NC_007605.1 + 39047 0.68 0.57586
Target:  5'- cCGGGCGGCCGCCgguggguccGCugggccgcugccccGCUCcgGGUGGGGGg -3'
miRNA:   3'- -GUCUGCCGGCGG---------CG--------------UGAG--UCGCUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.